Evidence map›Paper›PMID 40528217›Full record

ArticleJournal of translational medicine2025

Fecal microbiota transplantation from patients into animals to establish human microbiota-associated animal models: a scoping review.

Jakub Ruszkowski, Zofia Kachlik, Michał Walaszek, Dawid Storman, Karolina Podkowa, Paweł Garbarczuk, Paweł Jemioło, Weronika Łyzińska, Katarzyna Nowakowska, Konrad Grych and 1 more

Abstract readScoping Review
In one paragraph

Article in Journal of translational medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jakub RuszkowskiDepartment of Nephrology, Transplantology and Internal Medicine, Faculty of Medicine, Medical University of Gdańsk, Gdańsk, Poland. jakub.ruszkowski@gumed.edu.pl.ORCID 0000-0002-9666-9627
Zofia KachlikStudent Scientific Circle at the Department of Nephrology, Transplantology and Internal Medicine, Faculty of Medicine, Medical University of Gdańsk, Gdańsk, Poland.ORCID 0009-0000-4482-1191
Michał WalaszekStudent Scientific Circle at the Department of Nephrology, Transplantology and Internal Medicine, Faculty of Medicine, Medical University of Gdańsk, Gdańsk, Poland.ORCID 0009-0001-6105-1528
Dawid StormanDepartment of Hygiene and Dietetics, Faculty of Medicine, Chair of Epidemiology and Preventive Medicine, Jagiellonian University Medical College, Krakow, Poland.ORCID 0000-0001-6643-1389
Karolina PodkowaDepartment of Pathophysiology, Jagiellonian University Medical College, ul. Czysta 18, Krakow, 31-121, Poland.ORCID 0000-0002-9302-1059
Paweł GarbarczukStudent Scientific Circle at the Department of Nephrology, Transplantology and Internal Medicine, Faculty of Medicine, Medical University of Gdańsk, Gdańsk, Poland.
Paweł JemiołoAGH University of Krakow, Krakow, Poland.ORCID 0000-0001-5962-4043
Weronika ŁyzińskaStudent Scientific Circle at the Department of Nephrology, Transplantology and Internal Medicine, Faculty of Medicine, Medical University of Gdańsk, Gdańsk, Poland.ORCID 0009-0007-2549-9054
Katarzyna NowakowskaStudent Scientific Circle at the Department of Nephrology, Transplantology and Internal Medicine, Faculty of Medicine, Medical University of Gdańsk, Gdańsk, Poland.
Konrad GrychStudent Scientific Circle at the Department of Nephrology, Transplantology and Internal Medicine, Faculty of Medicine, Medical University of Gdańsk, Gdańsk, Poland.ORCID 0000-0001-9561-4758
Alicja M Dębska-ŚlizieńDepartment of Nephrology, Transplantology and Internal Medicine, Faculty of Medicine, Medical University of Gdańsk, Gdańsk, Poland.ORCID 0000-0001-8210-8063

Funding

Gdański Uniwersytet Medyczny "Medical University of Gdansk Excellence Initiative- Research University" program
6 · The paper itself

Abstract

backgroundFecal microbiota transplantation (FMT) from humans with specific medical conditions to animal models can demonstrate causality by inducing or exacerbating pathophenotypes, linking the gut microbiota to health outcomes.

methodsWe conducted a scoping review searching MEDLINE, EMBASE, Scopus, and Web of Science through July 2024 to identify human noninfectious diseases studied using FMT in animal models, investigate FMT methodologies, and assess the feasibility of systematic reviews on the role of the microbiota in specific diseases.

resultsFrom 605 reports of 489 studies, we found that inflammatory bowel diseases, irritable bowel syndrome, obesity, colorectal cancer, and depression were the most commonly studied, with cancer research focusing on immunotherapy non-responsiveness. In a random sample of studies, gastrointestinal outcomes were most frequently reported, with remarkably high rates (> 80%) of successful induction of disease-specific alterations for intestinal barrier function, gastrointestinal inflammation, circulating immune parameters, and fecal metabolites. Most studies used C57BL/6 mice and oral gavage administration, with recipients being either germ-free or antibiotic-pretreated. We created tables linking conditions with publications to facilitate future systematic reviews.

conclusionsAlthough human-to-animal FMT studies cover diverse conditions, methodological heterogeneity and inconsistent reporting hinder comparability. Standardized protocols and guidelines are needed. For several conditions, sufficient literature exists to assess the role of the gut microbiota in human health through systematic reviews.

Indexed as

Disease Models, AnimalFecal Microbiota TransplantationGastrointestinal MicrobiomeAnimalsHumansMiceAnimal modelCausalityDysbiosisEtiologyFecal microbiota transplantationResearch design

Identifiers

PMID40528217
PMCPMC12172294

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.