Evidence map›Paper›PMID 40525399›Full record

ArticleeLife2025

A contextual fear conditioning paradigm in head-fixed mice exploring virtual reality.

Seetha Krishnan, Can Dong, Heather Ratigan, Denisse Morales-Rodriguez, Chery Cherian, Mark Sheffield

Abstract read
In one paragraph

Article in eLife, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Seetha Krishnan *Department of Neurobiology and Institute for Neuroscience, University of Chicago, Chicago, United States.ORCID https://orcid.org/0000-0002-6218-3995
Can Dong *Department of Neurobiology and Institute for Neuroscience, University of Chicago, Chicago, United States.ORCID https://orcid.org/0000-0002-4368-4858
Heather RatiganDepartment of Neurobiology and Institute for Neuroscience, University of Chicago, Chicago, United States.
Denisse Morales-RodriguezDepartment of Neurobiology and Institute for Neuroscience, University of Chicago, Chicago, United States.ORCID https://orcid.org/0000-0002-3272-7023
Chery CherianDepartment of Neurobiology and Institute for Neuroscience, University of Chicago, Chicago, United States.
Mark SheffieldDepartment of Neurobiology and Institute for Neuroscience, University of Chicago, Chicago, United States.ORCID https://orcid.org/0000-0003-0969-7820

Funding

Integrative Training in the Neurobiology of Addictive BehaviorsT32DA043469 · NIDA · UNIVERSITY OF CHICAGO · PI Donald Hedeker, Xiaoxi Zhuang · 2017 to 2026
$3.8M
Sub-cellular resolution functional imaging and optogenetic manipulation of identified memory circuits during behaviorDP2NS111657 · NINDS · UNIVERSITY OF CHICAGO · PI SHEFFIELD, MARK E J · 2018 to 2018
$2.4M
From synapses to neural representations: The role of neuromodulatory circuits in shaping contextual memories in the hippocampusRF1NS127123 · NINDS · UNIVERSITY OF CHICAGO · PI SHEFFIELD, MARK E J · 2022 to 2022
$1.9M
Hippocampal memory mechanisms in nicotine relapseK01DA060994 · NIDA · VIRGINIA COMMONWEALTH UNIVERSITY · PI Seetha Lakshmi Krishnan · 2024 to 2026
$435k
BRAIN Initiative 1RF1NS127123NIDA NIH HHS K01 DA060994NIDA NIH HHS K01DA060994NIDA NIH HHS T32 DA043469NIDA NIH HHS T32DA043469NINDS NIH HHS 1DP2NS111657NINDS NIH HHS DP2 NS111657NINDS NIH HHS RF1 NS127123
6 · The paper itself

Abstract

Contextual fear conditioning (CFC) is a classical laboratory task that tests associative memory formation and recall. Techniques such as multi-photon microscopy and holographic stimulation offer tremendous opportunities to understand the neural underpinnings of these memories. However, these techniques generally require animals to be head-fixed. Few paradigms examine contextual fear in head-fixed mice, and none use freezing-the most common measure of fear in freely moving animals-as the behavioral readout. To address this gap, we developed a CFC paradigm for head-fixed mice using virtual reality (VR). We designed an apparatus to deliver tail shocks while mice navigated a VR environment. We tested three versions of this paradigm and, in all of them, observed increased freezing, particularly on the first trial, in the shock-paired VR compared to a neutral one. These results demonstrate that head-fixed mice can be fear-conditioned in VR and exhibit context-specific freezing behavior. Additionally, using two-photon calcium imaging, we tracked large populations of hippocampal CA1 neurons before, during, and following CFC. As in freely moving mice, CA1 place cells remapped and developed narrower fields following fear conditioning. Thus, our approach enables new opportunities to study the neural mechanisms underlying the formation, recall, and extinction of contextual fear memories.

Indexed as

Conditioning, ClassicalFearVirtual RealityAnimalsBehavior, AnimalCA1 Region, HippocampalMaleMiceMice, Inbred C57BLfear conditioningmouseneuroscienceplace cellstwo-photon imagingvirtual reality

Identifiers

PMID40525399
PMCPMC12173461

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.