Evidence map›Paper›PMID 40524432›Full record

ArticleMicrobial biotechnology2025

Indole Derivatives Biosynthesis in Bifidobacterium longum subsp. infantis and the Tryptophan Substrate Availability.

Shi-Min Zhang, Hui-Chu Wu, Jia-He Hung, Shir-Ly Huang

Abstract read
In one paragraph

Article in Microbial biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Trial
  2. The chemical blueprint of Trichoderma for next-generation microbial biostimulants.Metabolomics : Official journal of the Metabolomic Society · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Indole derivatives intervene osteoporosis via gut-bone axis.Frontiers in cellular and infection microbiology · 2026
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shi-Min ZhangProgram in Molecular Medicine, National Yang Ming Chiao Tung University, Taipei, Taiwan.
Hui-Chu WuInstitute of Microbiology and Immunology, National Yang Ming Chiao Tung University, Taipei, Taiwan.
Jia-He HungSchool of Medicine, National Yang Ming Chiao Tung University, Taipei, Taiwan.
Shir-Ly HuangInstitute of Microbiology and Immunology, National Yang Ming Chiao Tung University, Taipei, Taiwan.

Funding

National Science and Technology Council NSTC 112-2320-B-A49-042National Science and Technology Council NSTC 113-2320-B-A49-027
6 · The paper itself

Abstract

The metabolic processes of Bifidobacterium longum subsp. infantis, an early coloniser of the human gut, are essential for gut health, mainly due to the production of indole derivatives from tryptophan. This study investigates the capacity of B. infantis ATCC 15697 to biosynthesise indole-3-lactate (ILA), indole-3-acetate (IAA), and indole-3-carboxaldehyde (I3CA) and the regulatory effects of substrate availability on these pathways. The tryptophan catabolic profile of B. infantis ATCC 15697 under a non-growing but metabolically active state was investigated. Through HPLC-PDA and LC-MS analyses, we confirmed for the first time the production of IAA and I3CA by B. infantis ATCC 15697. The results revealed a dose-dependent relationship between tryptophan availability and the production of indole derivatives, highlighting the nutrient-driven effect of these metabolic pathways. By integrating genomic analysis with metabolic profiles, we proposed potential pathways underlying the biosynthesis of IAA and I3CA from tryptophan. These findings enhance our understanding of the role of B. infantis ATCC 15697 in human health, with ILA, IAA, and I3CA contributing to immune modulation and gut health. We also provide a platform for using B. infantis ATCC 15697 as a biocatalyst for the biosynthesis of beneficial indole derivatives through whole-cell bioconversion, which was further demonstrated in B. infantis ATCC 25962 and ATCC 15702. Future in vivo studies will help clarify the impact of these metabolites on the gut environment and inform dietary and probiotic strategies for enhancing indole derivatives production.

Indexed as

Bifidobacterium longumIndolesTryptophanChromatography, High Pressure LiquidChromatography, LiquidHumansIndoleacetic AcidsMass SpectrometryMetabolic Networks and Pathwaysindole-3-carbaldehydeindole-3-lactic acidindoleacetic acidIndoleacetic AcidsIndolesTryptophanBifidobacterium longum subsp. infantisindole‐3‐acetateindole‐3‐carboxaldehydeindole‐3‐lactateindole derivativessubstrate availabilitytryptophan

Identifiers

PMID40524432
PMCPMC12170944

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.