Evidence map›Paper›PMID 40523604›Full record

ArticleNeuroscience2025

Age-related dysregulation of proteasome-independent K63 polyubiquitination in the hippocampus and amygdala.

Yeeun Bae, Harshini Venkat, Natalie Preveza, W Keith Ray, Richard F Helm, Timothy J Jarome

Abstract read
In one paragraph

Article in Neuroscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yeeun BaeSchool of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
Harshini VenkatSchool of Neuroscience, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
Natalie PrevezaSchool of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
W Keith RayDepartment of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
Richard F HelmDepartment of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
Timothy J JaromeSchool of Animal Sciences, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA; School of Neuroscience, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA. Electronic address: tjjarome@vt.edu.

Funding

The sex-specific role of degradation-specific protein polyubiquitination in fear memory formationR01MH122414 · NIMH · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI JAROME, TIMOTHY JOSEPH · 2021 to 2025
$2.4M
Validating pig models for Alzheimer's diseaseR21AG079292 · NIA · UNIVERSITY OF MISSOURI-COLUMBIA · PI ALLEN, TIMOTHY ALEXANDER, JAROME, TIMOTHY JOSEPH · 2022 to 2022
$447k
Behavioral, molecular and sex-specific mechanisms of indirectly learned fear memoryR21MH131587 · NIMH · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI JAROME, TIMOTHY JOSEPH · 2023 to 2024
$433k
IGF2 regulation of microglia and synaptic function during agingR21AG071523 · NIA · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI JAROME, TIMOTHY JOSEPH, ROSENKRANZ, JEREMY E · 2022 to 2023
$433k
Alleviating age-related memory impairment through proteasome stimulationR21AG081851 · NIA · PURDUE UNIVERSITY · PI JAROME, TIMOTHY JOSEPH, TRASK, SYDNEY · 2023 to 2023
$429k
NIA NIH HHS R21 AG071523NIA NIH HHS R21 AG079292NIA NIH HHS R21 AG081851NIMH NIH HHS R01 MH122414NIMH NIH HHS R21 MH131587
6 · The paper itself

Abstract

Cognitive decline with aging is a complex process involving multiple brain regions and molecular mechanisms. While the role of the canonical protein degradation function of the ubiquitin-proteasome system (UPS) has been well studied in the context of aging and age-associated memory loss, the non-proteolytic functions of ubiquitin activity remain poorly understood. Here, we investigated the role of lysine-63 (K63) polyubiquitination, the most abundant form of proteasome-independent ubiquitination, in aged rats, focusing on the hippocampus and amygdala, two brain regions reported to have cellular and molecular alterations with age that are associated with age-related memory loss. Using an unbiased proteomic approach, we observed a significant increase of K63 polyubiquitination in the hippocampus across the lifespan. Reducing K63 polyubiquitination in the hippocampus of aged male rats using the CRISPR-dCas13 RNA editing system enhanced contextual fear memory, while similar manipulations in middle-aged rats, which typically have normal memory, had no effect, emphasizing the age-dependent role of K63 polyubiquitination in memory formation. Conversely, the amygdala showed a consistent reduction of K63 polyubiquitination protein targets across the lifespan, and further reductions of K63 polyubiquitination improved memory retention in aged, but not middle-aged, male rats. Together, our findings reveal the dynamic and region-specific functions of K63 polyubiquitination in the brain aging process, providing novel insights into its contribution to age-associated memory decline.

Indexed as

AgingAmygdalaHippocampusProteasome Endopeptidase ComplexUbiquitinationAnimalsFearLysineMaleMemoryRatsLysineProteasome Endopeptidase ComplexAgingAmygdalaFear ConditioningHippocampusMemoryUbiquitin

Identifiers

PMID40523604
PMCPMC12277059

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.