Evidence map›Paper›PMID 40523148›Full record

ArticleChembiochem : a European journal of chemical biology2025

A Self-Sufficient β-Methylarginine Biosynthetic Pathway in Planctomycetes.

Darwin Daniel Lara, Bryan Tianzuo Zeng, Yang Hai

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Darwin Daniel LaraInterdisciplinary Program in Quantitative Biosciences, University of California Santa Barbara, Santa Barbara, CA, 93106, USA.ORCID https://orcid.org/0009-0006-6887-7679
Bryan Tianzuo ZengDepartment of Chemistry & Biochemistry, University of California Santa Barbara, Santa Barbara, CA, 93106, USA.
Yang HaiInterdisciplinary Program in Quantitative Biosciences, University of California Santa Barbara, Santa Barbara, CA, 93106, USA.ORCID https://orcid.org/0000-0002-2039-5367

Funding

Understanding the specificity and non-native catalytic activity of PLP-dependent enzymesR35GM151205 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI Yang Hai · 2023 to 2026
$1.8M
NIGMS NIH HHS R35 GM151205NIH HHS R35GM151205
6 · The paper itself

Abstract

β-Methyl amino acids (β-MAAs) enhance the bioactivity of natural products and possess intrinsic pharmacological properties as free amino acids. While the biosynthetic capacity for this class of noncanonical amino acids has been established in certain bacterial lineages such as Gammaproteobacteria and Actinomycetes, other bacterial phyla remain largely unexplored. A genome-mining-guided discovery of a novel biosynthetic gene cluster capable of producing β-methylarginine, from the phylum Planctomycetes is reported. Both in vivo and in vitro evidence indicates that Planctomycetes employ a transaminase (PlaA) and a methyltransferase (PlaB) to synthesize this β-MAA. Unlike previously described β-methylarginine biosynthetic pathways, PlaA and PlaB function as a self-sufficient enzyme cascade that operates without the need for additional keto acid and amino acid partners. These findings expand the catalytic repertoire for β-MAAs biosynthesis and establish Planctomycetes as a new source of secondary metabolites discovery.

Indexed as

ArginineBacteriaBiosynthetic PathwaysMethyltransferasesMultigene FamilyTransaminasesArginineMethyltransferasesTransaminasesmethyl‐argininespyridoxal phosphate‐dependent enzymesβ‐genome minings

Identifiers

PMID40523148
PMCPMC12283067

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.