Evidence map›Paper›PMID 40521873›Full record

ArticleApplied and environmental microbiology2025

Organic particle scavenging by marine bacteria: influences of bacterial nanoscale surface properties.

Yosuke Yamada, Toshiaki Mochizuki, Nirav Patel, Farooq Azam, Hideki Fukuda, Toshi Nagata, Satoshi Mitarai

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yosuke YamadaKochi Institute for Core Sample Research, Institute for Extra-cutting-edge Science and Technology Avant-garde Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Nankoku, Kochi, Japan.ORCID 0000-0002-7175-1448
Toshiaki MochizukiOkinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.
Nirav PatelScripps Institution of Oceanography, La Jolla, California, USA.
Farooq AzamScripps Institution of Oceanography, La Jolla, California, USA.
Hideki FukudaAtmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba, Japan.
Toshi NagataAtmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba, Japan.
Satoshi MitaraiOkinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.

Funding

Japan Science and Technology Agency JPMJFR2070Japan Society for the Promotion of Science JP19H05667Japan Society for the Promotion of Science JP20K19960, JP24K21331Japan Society for the Promotion of Science JP21H03586Ministry of Education, Culture, Sports, Science and Technology WPI-AIMEC
6 · The paper itself

Abstract

Marine bacteria contribute to biogeochemical cycles by scavenging organic nanoparticles such as cell fragments, viruses, excretions from phytoplankton and bacteria, and naturally occurring polymeric substances. Nonetheless, bacterial surface properties influencing this process remain poorly understood. A previous study found that marine bacteria exhibit significant variation in surface roughness, which affects nanoparticle attachment, influencing bacterial survival and marine biogeochemical cycles. However, cell surface characteristics such as Young's modulus and adhesiveness have rarely been measured. This study investigated bacterial nanoscale surface properties and their effects on nanoparticle attachment. Atomic force microscopy was employed to measure these parameters of 559 individual bacterial cells collected from Okinawa coastal waters. These results revealed significant variation in Young's modulus (6-21,000 kPa) and adhesiveness (86-1,200 pN). Subsequent coincubation experiments with polystyrene beads and virus-like particles, as model nanoparticles, demonstrated a significant negative correlation between Young's modulus and the attachment of virus-like particles, whereas no significant relationships were observed for other factors. Our results suggest that measuring bacterial surface properties provides novel insights into their strategies for resource utilization and their contribution to marine biogeochemical cycles.IMPORTANCESurface properties of marine bacteria are believed to influence their ability to acquire nanoparticles for nutrition. However, studies on these properties are limited, and the relationship with nanoparticle attachment remains unclear. This study measured Young's modulus and adhesiveness of marine bacteria, investigating their variability and their influence upon nanoparticle attachment. This work sheds light on biophysical mechanisms driving bacterial nanoparticle utilization, as well as ecological and biogeochemical implications of bacterial surface properties in marine environments.

Indexed as

BacteriaNanoparticlesSeawaterBacterial AdhesionElastic ModulusMicroscopy, Atomic ForcePolystyrenesSurface PropertiesPolystyrenesadhesivenessbacterial surfacemarine biogeochemical cyclesmarine ecologynanoparticleYoung’s modulus

Identifiers

PMID40521873
PMCPMC12285227

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.