Evidence map›Paper›PMID 40517386›Full record

ArticleCell reports2025

Staphylococci in high resolution: Capturing diversity within the human nasal microbiota.

Anna Cäcilia Ingham, Duncan Y K Ng, Søren Iversen, Cindy M Liu, Khoa Manh Dinh, Silva Holtfreter, Sofie Marie Edslev, Thor Bech Johannesen, Amalie Katrine Rendboe, Mette Theilgaard Christiansen and 12 more

Abstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Observational
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Anna Cäcilia InghamDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark. Electronic address: anmc@ssi.dk.
Duncan Y K NgDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.
Søren IversenDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.
Cindy M LiuDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark; Department of Environmental and Occupational Health, George Washington University Milken Institute School of Public Health, Washington, DC, USA.
Khoa Manh DinhDepartment of Clinical Immunology, Aarhus University Hospital, Aarhus, Denmark; Department of Clinical Immunology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.
Silva HoltfreterInstitute for Immunology, University Medicine Greifswald, Greifswald, Germany.
Sofie Marie EdslevDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.
Thor Bech JohannesenDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.
Amalie Katrine RendboeDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.
Mette Theilgaard ChristiansenDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.
Kim Lee NgDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.
Robert SkovDivision of Epidemiological Infectious Disease Preparedness, Statens Serum Institut, Copenhagen, Denmark.
Stefanie SamietzDepartment of Prosthetic Dentistry, Gerodontology and Biomaterials, University Medicine Greifswald, Greifswald, Germany.
Dörte RadkeInstitute for Community Medicine, University Medicine Greifswald, Greifswald, Germany.
Stefan WeissInterfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany.
Uwe VölkerInterfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald, Greifswald, Germany.
Barbara M BrökerInstitute for Immunology, University Medicine Greifswald, Greifswald, Germany.
Lise Tornvig ErikstrupDepartment of Clinical Microbiology, Aarhus University Hospital, Aarhus, Denmark.
Christian ErikstrupDepartment of Clinical Immunology, Aarhus University Hospital, Aarhus, Denmark; Department of Clinical Medicine, Aarhus University, Aarhus, Denmark.
Lance B PriceDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark; Department of Environmental and Occupational Health, George Washington University Milken Institute School of Public Health, Washington, DC, USA.
Paal Skytt AndersenDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark; Department of Veterinary and Animal Sciences, University of Copenhagen, Frederiksberg, Denmark.
Marc SteggerDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark; Antimicrobial Resistance and Infectious Diseases Laboratory, Harry Butler Institute, Murdoch University, Perth, WA, Australia.

Funding

The dynamics of nasal bacterial ecology and S. aureus antagonismR01AI125562 · NIAID · GEORGE WASHINGTON UNIVERSITY · PI PRICE, LANCE BRADLEY · 2016 to 2020
$3.6M
Influence of the nasal microbiome on host susceptibility and response to respiratory virusesR01AI168182 · NIAID · GEORGE WASHINGTON UNIVERSITY · PI Cindy Liu · 2023 to 2026
$2.8M
NIAID NIH HHS R01 AI125562NIAID NIH HHS R01 AI168182
6 · The paper itself

Abstract

Staphylococci include both nasal commensals and opportunistic pathogens, globally responsible for a large proportion of infection-related deaths, especially in S. aureus carriers. To understand staphylococcal temporal dynamics within the nasal microbiota, we employed Staphylococcus-targeted sequencing in two cohorts from Denmark and Germany. We identified two major staphylococcal community state types (sCSTs)-one dominated by S. aureus and one dominated by S. epidermidis-and eight subgroups defined by co-colonizing coagulase-negative staphylococci. The distribution of sCSTs was similar between the two cohorts. Predominance of either S. aureus or S. epidermidis was highly persistent over time, whereas co-colonizing staphylococcal species were transient with varying stability among the sCST subgroups. Detection of S. aureus by culture was positively associated with absolute abundance by qPCR. S. aureus domination was diminished when Dolosigranulum and Corynebacterium co-occurred. Our findings could inform efforts to reduce S. aureus nasal colonization and infection.

Indexed as

MicrobiotaNoseStaphylococcusAdultDenmarkFemaleGermanyHumansMaleMiddle AgedStaphylococcal InfectionsStaphylococcus aureusStaphylococcus epidermidisantagonistcarriagecommunity state typeCP: Microbiologymicrobial abundancemicrobiomenasal microbiotastaphylococciStaphylococcus aureusStaphylococcus epidermidis

Identifiers

PMID40517386
PMCPMC12322312

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.