Evidence map›Paper›PMID 40517149›Full record

ArticleCommunications biology2025

Genetic diversity and comparative genomics across Leishmania (Viannia) species.

Laura Natalia Gonzalez-Garcia, Maria Paula Rodriguez, Marcela Parra-Muñoz, Ana M Clavijo, Laura Levy, Clemencia Ovalle-Bracho, Claudia Colorado, Carolina Camargo, Eyson Quiceno, Maria Juliana Moncada and 6 more

Abstract readComparative Study
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Unraveling the Genome Diversity ofLife (Basel, Switzerland) · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Laura Natalia Gonzalez-GarciaSystems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia.ORCID http://orcid.org/0000-0002-4079-8956
Maria Paula RodriguezSystems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia.
Marcela Parra-MuñozDepartamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia - Sede Bogotá, Bogotá, Colombia.
Ana M ClavijoDepartamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia - Sede Bogotá, Bogotá, Colombia.
Laura LevySystems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia.
Clemencia Ovalle-BrachoHospital Universitario Centro Dermatológico Federico Lleras Acosta E.S.E, Bogotá, Colombia.
Claudia ColoradoHospital Universitario Centro Dermatológico Federico Lleras Acosta E.S.E, Bogotá, Colombia.
Carolina CamargoHospital Universitario Centro Dermatológico Federico Lleras Acosta E.S.E, Bogotá, Colombia.
Eyson QuicenoPrograma de Estudio y Control de Enfermedades Tropicales-PECET, Facultad de Medicina, Universidad de Antioquia, Medellín, Colombia.
Maria Juliana MoncadaPrograma de Estudio y Control de Enfermedades Tropicales-PECET, Facultad de Medicina, Universidad de Antioquia, Medellín, Colombia.
Carlos MuskusPrograma de Estudio y Control de Enfermedades Tropicales-PECET, Facultad de Medicina, Universidad de Antioquia, Medellín, Colombia.ORCID http://orcid.org/0000-0003-4280-5627
Daniel Alfonso UrreaLaboratorio de Investigaciones en Parasitología Tropical (LIPT), Universidad del Tolima, Ibagué, Colombia.
Felipe Baez-AguirreApplied Genomics Research Group, Vicerrectoría de Investigación y Creación, Universidad de los Andes, Bogotá, Colombia.
Silvia RestrepoUniversidad de los Andes, Bogotá, Colombia.ORCID http://orcid.org/0000-0001-9016-1040
María Clara EcheverryDepartamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia - Sede Bogotá, Bogotá, Colombia. mcecheverryg@unal.edu.co.ORCID http://orcid.org/0000-0002-5590-6470
Jorge DuitamaSystems and Computing Engineering Department, Universidad de los Andes, Bogotá, Colombia. ja.duitama@uniandes.edu.co.ORCID http://orcid.org/0000-0002-9105-6266

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leishmaniasis is an important public health problem worldwide, with a broad spectrum of clinical and epidemiological features partly associated with the diversity and complex life cycle of the Leishmania parasites. This study analyzes genomic data from 205 Leishmania (Viannia) samples, including 65 newly sequenced clinical isolates. It also provides chromosome-level genome assemblies for 10 isolates representing different species and populations. The observed distribution of Leishmania genomic diversity across the sampling locations suggests rapid adaptation to different ecosystems. The phylogenomic analysis provides new hypotheses challenging the current delimitation of species. Pangenomic analysis of high-quality assemblies shows consistent copy number variation between species for different gene families. Larger and more diverse amastin gene families were observed in the assembled genomes compared to previous reports based on the analysis of short-read data. This work provides genomic resources and helpful information regarding central problems in the biology of Leishmania spp, including species diversification, transmission dynamics, and the evolution of virulence mechanisms.

Indexed as

Genetic VariationGenome, ProtozoanGenomicsLeishmaniaDNA Copy Number VariationsHumansLeishmaniasisPhylogeny

Identifiers

PMID40517149
PMCPMC12167367

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.