Evidence map›Paper›PMID 40515997›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

Activity-Based Protein Profiling of Bacterial Monooxygenases.

John B Joyce, Michael R Hyman

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Aerobic catabolism of isobutylene byApplied and environmental microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

John B JoyceDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA.ORCID https://orcid.org/0000-0002-2926-4515
Michael R HymanDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, USA. mrhyman@ncsu.edu.ORCID https://orcid.org/0000-0002-5965-6579

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activity-based protein profiling (ABPP) is a proteomics approach that enables the selective molecular characterization of specific proteins within complex mixtures. A variety of activity-based approaches have been used to characterize some important bacterial monooxygenases such as ammonia monooxygenase (AMO) that have resisted purification-based characterization. In this report, we describe a 2-step ABPP method for AMO and several other types of bacterial monooxygenases that play key roles in biogeochemical cycles and processes. The focus of this report is on SDS-PAGE-based methods to detect fluorescently labeled monooxygenase components. This report also draws attention to various features of these types of analyses that can impact the use of ABPP approaches for the quantification of monooxygenase components and their detection in different compartments of bacterial cells.

Indexed as

BacteriaBacterial ProteinsMixed Function OxygenasesProteomicsElectrophoresis, Polyacrylamide GelBacterial ProteinsMixed Function OxygenasesActivity-based protein profilingDiyne probeMonooxygenasesNear-infrared (NIR) fluorescent imagingSDS-PAGE

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.