Evidence map›Paper›PMID 40515990›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

Activity-Based Protein Profiling to Study Virus-Host and Viral-Induced MicroRNA-Host Interactions.

Parrish Evers, John Paul Pezacki

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Parrish EversDepartment of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, ON, Canada.
John Paul PezackiDepartment of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, ON, Canada. john.pezacki@uottawa.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activity-based protein profiling (ABPP) is a robust technique enabling the user to explore the functional implications of disease and pathology on key protein effectors. As such, a variety of activity-based probes have been developed and applied broadly to study virus-host interactions and the consequences of essential noncoding RNAs, like microRNAs, which viruses exploit for their propagation. The following protocol describes the process of infecting and transfecting cells for ABPP and covers the main ways in which ABPP can be used to study infection: in-gel fluorescence, western blotting, and mass spectrometry. Taken together, the findings of these experiments can be used to identify new therapeutic targets and to test novel antiviral inhibitors.

Indexed as

Host-Pathogen InteractionsMicroRNAsProteomicsVirusesAnimalsBlotting, WesternHumansMass SpectrometryMicroRNAsActivity-based protein profiling (ABPP)Chemical ProteomicsChemoproteomicsHepatic lipase (LIPC)In-gel fluorescenceMass spectrometrymicroRNAVirusWestern blotting

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.