Evidence map›Paper›PMID 40515680›Full record

ArticleThe Plant cell2025

Polycomb repressive complex 2 facilitates the transition from heterotrophy to photoautotrophy during seedling emergence.

Naseem Samo, María Guadalupe Trejo-Arellano, Lenka Gahurová, Alexander Erban, Alina Ebert, Quentin Rivière, Jiří Kubásek, Fatemeh Aflaki, Helena Hönig Mondeková, Armin Schlereth and 8 more

Abstract read
In one paragraph

Article in The Plant cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Naseem SamoBiology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice 37005, Czech Republic.ORCID 0000-0002-4666-5046
María Guadalupe Trejo-ArellanoBiology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice 37005, Czech Republic.ORCID 0000-0002-5208-431X
Lenka GahurováUniversity of South Bohemia in České Budějovice, Faculty of Science, Branišovská 31, České Budějovice 37005, Czech Republic.ORCID 0000-0002-9412-7971
Alexander ErbanApplied Metabolome Analysis Infrastructure Group, Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam 14476, Germany.ORCID 0000-0003-1794-588X
Alina EbertApplied Metabolome Analysis Infrastructure Group, Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam 14476, Germany.ORCID 0009-0003-6195-3155
Quentin RivièreBiology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice 37005, Czech Republic.ORCID 0000-0003-3522-6256
Jiří KubásekUniversity of South Bohemia in České Budějovice, Faculty of Science, Branišovská 31, České Budějovice 37005, Czech Republic.ORCID 0000-0001-8540-6904
Fatemeh AflakiBiology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice 37005, Czech Republic.ORCID 0000-0002-4005-2476
Helena Hönig MondekováBiology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice 37005, Czech Republic.ORCID 0000-0002-4068-7981
Armin SchlerethApplied Metabolome Analysis Infrastructure Group, Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam 14476, Germany.ORCID 0000-0001-9383-2145
Annick DuboisLaboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, INRIA, 69342 Lyon, France.ORCID 0000-0002-3646-3811
Mingxi ZhouBiology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice 37005, Czech Republic.ORCID 0000-0002-6399-0449
Ondřej NovákLaboratory of Growth Regulators, Faculty of Science of Palacký University and Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 27, Olomouc 78371, Czech Republic.ORCID 0000-0003-3452-0154
Jiří ŠantrůčekUniversity of South Bohemia in České Budějovice, Faculty of Science, Branišovská 31, České Budějovice 37005, Czech Republic.ORCID 0000-0003-0430-5795
Daniel BouyerLaboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, INRIA, 69342 Lyon, France.ORCID 0000-0002-7438-5551
François RoudierLaboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, INRIA, 69342 Lyon, France.ORCID 0000-0002-1757-6386
Joachim KopkaApplied Metabolome Analysis Infrastructure Group, Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam 14476, Germany.ORCID 0000-0001-9675-4883
Iva MozgováBiology Centre of the Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice 37005, Czech Republic.ORCID 0000-0002-3815-9223

Funding

e-INFRA CZ ID:90254INRAe AAP blanc BAP ANR-21-CE20-0007Lumina quaeruntur LQ200961901Max Planck SocietyMelbourne-Potsdam PhD ProgramMinistry of Education, Youth and Sports of the Czech RepublicUniversity of South Bohemia GAJU 049/2021/P
6 · The paper itself

Abstract

The seed-to-seedling transition represents a key developmental and metabolic switch in plants. Catabolism of seed storage reserves fuels germination and early seedling emergence until photosynthesis is established. The seed-to-seedling developmental transition is controlled by Polycomb repressive complex 2 (PRC2). However, the coordination of PRC2 activity and its contribution to transcriptional reprogramming during seedling establishment remain unknown. By analyzing H3K27me3 re-distribution and changes in gene transcription in the shoot and root tissues of heterotrophic and photoautotrophic Arabidopsis (Arabidopsis thaliana) seedlings, we reveal 2 phases of PRC2-mediated gene repression. The first phase is independent of light and photosynthesis and results in the irreversible repression of the embryo maturation program, marked by heterotrophy and reserve storage molecule biosynthesis. The second phase is associated with the repression of metabolic pathways related to germination and early seedling emergence, and H3K27me3 deposition in this phase is sensitive to photosynthesis inhibition. We show that preventing the transcription of the PRC2-repressed glyoxylate cycle gene ISOCITRATE LYASE promotes the vegetative phase transition in PRC2-depleted plants. Our findings underscore a key role of PRC2-mediated transcriptional repression in the coordinated metabolic and developmental switches that occur during seedling emergence and emphasize the close connection between metabolic and developmental identities.

Indexed as

ArabidopsisArabidopsis ProteinsPolycomb Repressive Complex 2SeedlingsAutotrophic ProcessesGene Expression Regulation, PlantGerminationHeterotrophic ProcessesHistonesPhotosynthesisSeedsArabidopsis ProteinsHistonesPolycomb Repressive Complex 2

Identifiers

PMID40515680
PMCPMC12236341

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.