Evidence map›Paper›PMID 40512786›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Structural basis of the hepatitis B virus X protein in complex with DDB1.

Hiroki Tanaka, Joao Diogo Dias, Basile Jay, Shunsuke Kita, Mina Sasaki, Hiroyuki Takeda, Naoki Kishimoto, Shunsuke Sasaki, Shogo Misumi, Masashi Mizokami and 5 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Hiroki TanakaDepartment of Structural Virology, National Institute of Global Health and Medicine, Japan Institute for Health Security, Shinjuku-ku, Tokyo 162-8655, Japan.ORCID 0000-0002-7404-3527
Joao Diogo DiasInstitut de Génétique Humaine, Laboratoire de Virologie Moléculaire, CNRS Université de Montpellier, Montpellier 34000, France.ORCID 0009-0007-8979-6779
Basile JayInstitut de Génétique Humaine, Laboratoire de Virologie Moléculaire, CNRS Université de Montpellier, Montpellier 34000, France.ORCID 0000-0001-8573-8722
Shunsuke KitaLaboratory of Biomolecular Science, Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan.ORCID 0000-0003-3969-302X
Mina SasakiLaboratory of Biomolecular Science, Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan.ORCID 0009-0006-6743-8789
Hiroyuki TakedaDivision of Proteo-Drug-Discovery Sciences, Proteo-Science Center, Ehime University, Matsuyama, Ehime 790-8577, Japan.ORCID 0000-0003-1677-8127
Naoki KishimotoDepartment of Environmental and Molecular Health Sciences, Faculty of Life Sciences, Kumamoto University, Kumamoto 862-0973, Japan.ORCID 0000-0002-9401-8118
Shunsuke SasakiDepartment of Environmental and Molecular Health Sciences, Faculty of Life Sciences, Kumamoto University, Kumamoto 862-0973, Japan.
Shogo MisumiDepartment of Environmental and Molecular Health Sciences, Faculty of Life Sciences, Kumamoto University, Kumamoto 862-0973, Japan.ORCID 0000-0002-9465-4720
Masashi MizokamiGenome Medical Sciences Project, Research Institute, National Center for Global Health and Medicine, Ichikawa, Chiba 272-8516, Japan.ORCID 0000-0001-5269-4006
Christine NeuveutInstitut de Génétique Humaine, Laboratoire de Virologie Moléculaire, CNRS Université de Montpellier, Montpellier 34000, France.ORCID 0000-0001-6520-271X
Takashi SumikamaWorld Premier International Research Center Initiative, Nano Life Science Institute, Kanazawa University, Kanazawa, Ishikawa 920-1192, Japan.ORCID 0000-0003-3696-5720
Mikihiro ShibataWorld Premier International Research Center Initiative, Nano Life Science Institute, Kanazawa University, Kanazawa, Ishikawa 920-1192, Japan.ORCID 0000-0001-5041-3979
Katsumi MaenakaLaboratory of Biomolecular Science, Faculty of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan.ORCID 0000-0002-5459-521X
Shinichi MachidaDepartment of Structural Virology, National Institute of Global Health and Medicine, Japan Institute for Health Security, Shinjuku-ku, Tokyo 162-8655, Japan.ORCID 0009-0002-8891-4888

Funding

Japan Agency for Medical Research and Development (AMED) JP20ae0101047Japan Agency for Medical Research and Development (AMED) JP223fa627005Japan Agency for Medical Research and Development (AMED) JP22ama121037Japan Agency for Medical Research and Development (AMED) JP25fk0310527Japan Agency for Medical Research and Development (AMED) JP25fk0310530Japan Agency for Medical Research and Development (AMED) JP25fk0310547Japan Agency for Medical Research and Development (AMED) JP25fk0410078MEXT | Japan Society for the Promotion of Science (JSPS) JP20H05873MEXT | Japan Society for the Promotion of Science (JSPS) JP25K02504National Center for Global Health and Medicine (NCGM) 22T003National Center for Global Health and Medicine (NCGM) 23A1016National Center for Global Health and Medicine (NCGM) 23A1017
6 · The paper itself

Abstract

A cure for chronic hepatitis B requires eliminating or permanently silencing covalently closed circular DNA (cccDNA). A pivotal target of this approach is the hepatitis B virus (HBV) X protein (HBx), which is a key factor that promotes transcription from cccDNA. However, the HBx structure remains unsolved. Here, we present the cryoelectron microscopy structure of HBx in complex with DDB1, which is an essential complex for cccDNA transcription. In this structure, hydrophobic interactions within HBx were identified, and mutational analysis highlighted their importance in the HBV life cycle. Our biochemical analysis revealed that the HBx-DDB1 complex directly interacts simultaneously with NSE3, which is a component of the SMC5/6 complex, and Spindlin1. Additionally, HBx-DDB1 complex dynamics were explored via high-speed atomic force microscopy. These findings provide comprehensive insights into the structure and function of HBx in HBV replication.

Indexed as

DNA-Binding ProteinsHepatitis B virusTrans-ActivatorsCryoelectron MicroscopyDNA, CircularDNA, ViralHumansMicroscopy, Atomic ForceProtein BindingViral Regulatory and Accessory ProteinsVirus ReplicationDDB1 protein, humanDNA-Binding ProteinsDNA, CircularDNA, Viralhepatitis B virus X proteinTrans-ActivatorsViral Regulatory and Accessory Proteinscryo-EM structureHBxhepatitis B virushigh-speed AFM

Identifiers

PMID40512786
PMCPMC12184330

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.