Evidence map›Paper›PMID 40512773›Full record

ArticlePloS one2025

Genetic variations associated with adaptation in Acrocomia palms: A comparative study across the Neotropics for crop improvement.

Jonathan A Morales-Marroquín, Alessandro Alves-Pereira, Brenda Gabriela Díaz-Hernández, Suelen Alves Vianna, Carlos Eduardo de Araújo Batista, Carlos A Colombo, José Baldin Pinheiro, Maria Imaculada Zucchi

Erratum issuedAbstract readComparative Study
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Jonathan A Morales-MarroquínGenetics and Molecular Biology Department, Biology Institute, University of Campinas (UNICAMP), Campinas, São Paulo, Brazil.ORCID 0000-0002-7946-577X
Alessandro Alves-PereiraDepartment of Genetics, "Luiz de Queiroz" College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil.
Brenda Gabriela Díaz-HernándezDepartment of Genetics, "Luiz de Queiroz" College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil.ORCID 0000-0001-7787-8522
Suelen Alves ViannaInstitute of Agronomy-IAC, Research Center of Plant Genetic Resources, Campinas, São Paulo, Brazil.ORCID 0000-0002-5426-9342
Carlos Eduardo de Araújo BatistaDepartment of Genetics, "Luiz de Queiroz" College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil.
Carlos A ColomboInstitute of Agronomy-IAC, Research Center of Plant Genetic Resources, Campinas, São Paulo, Brazil.
José Baldin PinheiroDepartment of Genetics, "Luiz de Queiroz" College of Agriculture, University of São Paulo, Piracicaba, São Paulo, Brazil.
Maria Imaculada ZucchiGenetics and Molecular Biology Department, Biology Institute, University of Campinas (UNICAMP), Campinas, São Paulo, Brazil.

Funding

National Council for Scientific and Technological Development (CNPq) 431226/2018-0São Paulo Research Foundation (FAPESP) 2021/10319-0, 2019/20307-0, 2014/23591-7São Paulo Research Foundation for a post-doctoral scholarship to AA-P (FAPESP 2018/00036-9)
6 · The paper itself

Abstract

Population genetic research has evolved, focusing on selection processes using single nucleotide polymorphisms (SNP) genotyping techniques to study crop traits and domestication. This study explores the adaptation process of three neotropical palms of Acrocomia, a genus that has high potential for oil extraction. Our research focused on their genetic structure, evolutionary significance, and implications of the selection signatures for breeding efforts. We employed genotyping-by-sequencing (GBS) focusing on outlier SNP markers to identify adaptive genes in A. aculeata, A. totai, and A. intumescens across their entire distributions. Our results reveal two major gene pools in A. aculeata: a Central American group and a South American group, mainly influenced by dispersal and biogeographic barriers. Putative selective signatures were identified in candidate genes associated with traits related to oil biosynthesis, pathogen resistance, and adaptation to environmental stress like drought tolerance. A. totai exhibited a pronounced genetic structure influenced by distinct biomes, suggesting recent diversification driven by climatic and geological factors, particularly within the Pantanal biome. A. intumescens displays genetic structuring shaped by the endemic process of biogeographic barriers within the Caatinga biome. Correlations between allele frequencies and climatic variables highlight adaptation to diverse environments, with the annual mean temperature and precipitations being one of the most influential. Candidate genes associated with fatty acid and carotenoid biosynthesis, as well as pathogen resistance and drought tolerance, indicate targets for future breeding studies. Despite the challenges associated with reduced representation sequencing, this study highlights the potential for gene discovery in Acrocomia, offering promising targets to enhance oil yield productivity. Future efforts should prioritize whole-genome sequencing and genotype-environment interaction studies to realize the full potential of Acrocomia spp. in sustainable oil production.

Indexed as

Adaptation, PhysiologicalArecaceaeCrops, AgriculturalGenetic VariationGenotypePlant BreedingPolymorphism, Single Nucleotide

Identifiers

PMID40512773
PMCPMC12165397

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.