Evidence map›Paper›PMID 40506605›Full record

ArticleJournal of pharmacokinetics and pharmacodynamics2025

Cross-species translational modelling of targeted therapeutic oligonucleotides using physiologically based pharmacokinetics.

Abdallah Derbalah, Felix Stader, Cong Liu, Adriana Zyla, Tariq Abdulla, Qier Wu, Masoud Jamei, Iain Gardner, Armin Sepp

Erratum issuedAbstract read
In one paragraph

Article in Journal of pharmacokinetics and pharmacodynamics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Tissue Pharmacokinetics of Antisense Oligonucleotides.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Abdallah DerbalahCertara Predictive Technologies Division, Certara UK Ltd, Level 2-Acero, 1 Concourse Way, Sheffield, S1 2BJ, UK. Abdallah.Derbalah@Certara.com.
Felix StaderCertara Predictive Technologies Division, Certara UK Ltd, Level 2-Acero, 1 Concourse Way, Sheffield, S1 2BJ, UK.
Cong LiuCertara Predictive Technologies Division, Certara UK Ltd, Level 2-Acero, 1 Concourse Way, Sheffield, S1 2BJ, UK.
Adriana ZylaCertara Predictive Technologies Division, Certara UK Ltd, Level 2-Acero, 1 Concourse Way, Sheffield, S1 2BJ, UK.
Tariq AbdullaCertara Predictive Technologies Division, Certara UK Ltd, Level 2-Acero, 1 Concourse Way, Sheffield, S1 2BJ, UK.
Qier WuCertara Predictive Technologies Division, Certara UK Ltd, Level 2-Acero, 1 Concourse Way, Sheffield, S1 2BJ, UK.
Masoud JameiCertara Predictive Technologies Division, Certara UK Ltd, Level 2-Acero, 1 Concourse Way, Sheffield, S1 2BJ, UK.
Iain GardnerCertara Predictive Technologies Division, Certara UK Ltd, Level 2-Acero, 1 Concourse Way, Sheffield, S1 2BJ, UK.
Armin SeppCertara Predictive Technologies Division, Certara UK Ltd, Level 2-Acero, 1 Concourse Way, Sheffield, S1 2BJ, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oligonucleotide therapeutics hold promise for targeted gene silencing, yet achieving optimal tissue-specific delivery remains challenging. This study introduces a mechanistic whole-body physiologically based pharmacokinetic (PBPK) model to predict tissue uptake dynamics of both conjugated (targeted) and unconjugated oligonucleotides across species. The model incorporates two uptake pathways: a non-saturable nonspecific pathway for all oligonucleotides and receptor-mediated endocytosis (RME) specific to conjugated molecules. Parameters for nonspecific uptake were derived from plasma and tissue concentration data of unconjugated antisense oligonucleotides (ASOs) in rats, while RME parameters for N-acetylgalactosamine (GalNAc)-conjugated oligonucleotides targeting the asialoglycoprotein receptor (ASGPR) were obtained from literature. Model validation against experimental data for conjugated and unconjugated ASOs and small interfering RNAs (siRNAs) in rats and mice demonstrated good predictive performance, with median predicted-to-observed AUC ratios of 0.84 (Interquartile range [IQR] 0.434-1.22) in rats and 0.629 (IQR 0.3-1.6) in mice. Local sensitivity analyses identified key parameters and processes influencing organ uptake, including the unbound plasma fraction and receptor-mediated uptake efficiency. Simulations highlighted the potential of sustained-release formulations to improve targeting specificity by mitigating receptor saturation. This is the first whole-body PBPK model to describe oligonucleotide pharmacokinetics across species and modalities. The model provides critical mechanistic insights to optimize tissue-specific delivery, guide formulation strategies, and enhance therapeutic outcomes for targeted oligonucleotide therapeutics.

Indexed as

Models, BiologicalOligonucleotidesOligonucleotides, AntisenseAcetylgalactosamineAnimalsAsialoglycoprotein ReceptorEndocytosisMaleMiceRatsRNA, Small InterferingSpecies SpecificityTissue DistributionTranslational Research, BiomedicalAcetylgalactosamineAsialoglycoprotein ReceptorOligonucleotidesOligonucleotides, AntisenseRNA, Small InterferingASOGalNAcOligonucleotidesPBPKSiRNATargeted Drug Delivery

Identifiers

PMID40506605
PMCPMC12162790

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.