Evidence map›Paper›PMID 40506519›Full record

ArticleGenes and immunity2025

Butyrate enhances CD56

Federico Carlini, Margherita Squillario, Valentina Casella, Matteo Capaia, Valeria Lusi, Davide Bagnara, Monica Colombo, Serena Palmeri, Federico Ivaldi, Fabrizio Loiacono and 3 more

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In one paragraph

Article in Genes and immunity, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Federico Carlini *IRCCS Ospedale Policlinico San Martino, Genova, Italy.
Margherita Squillario *IRCCS Ospedale Policlinico San Martino, Genova, Italy.ORCID 0000-0002-6612-3383
Valentina CasellaIRCCS Ospedale Policlinico San Martino, Genova, Italy.
Matteo CapaiaDepartment of Neuroscience, Rehabilitation, Ophthalmology, Genetics, Maternal and Child Health, University of Genova, Genova, Italy.
Valeria LusiIRCCS Ospedale Policlinico San Martino, Genova, Italy.
Davide BagnaraDepartment of Experimental Medicine, University of Genova, Genova, Italy.
Monica ColomboIRCCS Ospedale Policlinico San Martino, Genova, Italy.ORCID 0000-0001-5512-8106
Serena PalmeriDepartment of Neuroscience, Rehabilitation, Ophthalmology, Genetics, Maternal and Child Health, University of Genova, Genova, Italy.
Federico IvaldiDepartment of Internal Medicine and Medical Specialties, University of Genova, Genova, Italy.
Fabrizio LoiaconoIRCCS Ospedale Policlinico San Martino, Genova, Italy.
Antonio UccelliIRCCS Ospedale Policlinico San Martino, Genova, Italy.
Michele PianaIRCCS Ospedale Policlinico San Martino, Genova, Italy.
Alice LaroniIRCCS Ospedale Policlinico San Martino, Genova, Italy. alice.laroni@unige.it.ORCID 0000-0001-5599-9788

Funding

Fondazione Italiana Sclerosi Multipla (Italian Multiple Sclerosis Foundation) 2018/R/7Ministero della Salute (Ministry of Health, Italy) Ricerca Corrente
6 · The paper itself

Abstract

Gut bacteria-derived metabolites, such as butyrate (BUT), induce T regulatory cells through inhibition of histone deacetylases (HDAC). Natural killer (NK) cells are innate lymphocytes with important effector and regulatory functions; little is known on the effect of BUT on NK cells. Here we aimed at evaluating whether BUT affects the epigenetic landscape of human NK cells. We found that BUT inhibits HDAC on human NK cells. Through ATAC sequencing, we demonstrated that BUT affects the chromatin accessibility of human NK cells, influencing, among others, genetic pathways related to immune regulation, response to viruses, chromatin remodeling and genes encoding for micro-RNAs. We identified, through analysis of published transcriptomic data, genes specific for NK-cell functional clusters, and we overlapped results of ATAC-sequencing, finding that BUT activates genes specific for CD56

Indexed as

ButyratesCD56 AntigenChromatinKiller Cells, NaturalT-LymphocytesAntigens, Differentiation, T-LymphocyteCytotoxicity, ImmunologicEpigenesis, GeneticHistone Deacetylase InhibitorsHumansLymphocyte ActivationAntigens, Differentiation, T-LymphocyteButyratesCD56 AntigenChromatinHistone Deacetylase InhibitorsNCAM1 protein, human

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.