Evidence map›Paper›PMID 40506497›Full record

ArticleNPJ biofilms and microbiomes2025

Metagenomic insight into the vaginal microbiome in women infected with HPV 16 and 18.

Da-Ryung Jung, Yeseul Choi, Minsoo Jeong, Vineet Singh, Se Young Jeon, Incheol Seo, Nora Jee-Young Park, Yoon Hee Lee, Ji Young Park, Hyung Soo Han and 2 more

Abstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Systems analysis of the HPV-microbiome-biofilm triad.Frontiers in cellular and infection microbiology · 2026
    Pooled it
  2. Review
  3. mBio · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. HPV vaccination associates withFrontiers in microbiology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. The vaginal microbiome in HPV persistence and cervical cancer progression.Frontiers in cellular and infection microbiology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Da-Ryung JungDepartment of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea.ORCID http://orcid.org/0009-0009-6683-0991
Yeseul ChoiDepartment of Biomedical Science, Graduate School, Kyungpook National University, Daegu, Republic of Korea.
Minsoo JeongDepartment of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea.
Vineet SinghDepartment of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea.
Se Young JeonDepartment of Obstetrics and Gynecology, Kyungpook National University Chilgok Hospital, Daegu, Republic of Korea.
Incheol SeoClinical Omics Institute, Kyungpook National University, Daegu, Republic of Korea.
Nora Jee-Young ParkClinical Omics Institute, Kyungpook National University, Daegu, Republic of Korea.
Yoon Hee LeeDepartment of Obstetrics and Gynecology, Kyungpook National University Chilgok Hospital, Daegu, Republic of Korea.
Ji Young ParkDepartment of Pathology, Kyungpook National University Chilgok Hospital, Daegu, Republic of Korea.
Hyung Soo HanDepartment of Biomedical Science, Graduate School, Kyungpook National University, Daegu, Republic of Korea.
Jae-Ho ShinDepartment of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea. jhshin@knu.ac.kr.
Gun Oh ChongDepartment of Obstetrics and Gynecology, Kyungpook National University Chilgok Hospital, Daegu, Republic of Korea. gochong@knu.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human papillomavirus (HPV) 16 and 18 (HPV 16/18) account for over 70% of cervical cancer (CC) cases, yet their interaction with the vaginal microbiome (VM) remains unclear. This study explored the association between high-risk HPV types (HR-HPVs), VM composition and bacterial function using shotgun metagenomic sequencing. In early-stage cervical lesions, the HPV 16/18 group showed reduced Lactobacillus-dominant community state types compared to other HR-HPVs, while invasive CC exhibited increased pathogenic bacteria, including Streptococcus agalactiae, Fannyhessea vaginae, and Sneathia vaginalis. The VM associated with HPV 16/18 was enriched in immune response and inflammation pathways, whereas other HR-HPVs were linked to cellular metabolism and hormonal signaling. Notably, HPV 16/18 exhibited stronger bacterial-fungal correlations, indicating shifts in the microbial community. Furthermore, 137 metagenome-assembled genomes provided insights into unique microbial genomic signatures. Our study links VM differences with HPV 16/18 oncogenic potential across cervical lesion stages, urging further research for better diagnostics and treatments.

Indexed as

BacteriaHuman papillomavirus 16Human papillomavirus 18MicrobiotaPapillomavirus InfectionsVaginaAdultFemaleHumansMetagenomeMetagenomicsMiddle AgedUterine Cervical Neoplasms

Identifiers

PMID40506497
PMCPMC12162855

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.