Evidence map›Paper›PMID 40506475›Full record

ArticleCommunications chemistry2025

Observation of early events in the photoactivation of Myxobacterial phytochrome using time-resolved serial femtosecond crystallography.

Tek Narsingh Malla, Luis Aldama, Viridiana Leon, Denisse Feliz, Hao Hu, Isaiah Thomas, Andrea Cellini, Weixiao Y Wahlgren, Amke Nimmrich, Sabine Botha and 33 more

Abstract read
In one paragraph

Article in Communications chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors.

Tek Narsingh MallaDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.ORCID http://orcid.org/0000-0002-1387-0801
Luis AldamaDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Viridiana LeonDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Denisse FelizDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Hao HuDepartment of Physics, Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0000-0003-3472-0404
Isaiah ThomasDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.
Andrea CelliniDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0001-5348-4158
Weixiao Y WahlgrenDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0003-0413-165X
Amke NimmrichDepartment of Chemistry, University of Washington, Seattle, WA, USA.
Sabine BothaDepartment of Physics, Arizona State University, Tempe, AZ, USA.ORCID http://orcid.org/0000-0003-4362-7543
Ray SierraLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0002-6253-8282
Mark S HunterLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0002-0110-7075
Frédéric PoitevinLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Stella LisovaLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Alexander BatyukLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0002-9393-2880
Gregory GateLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0002-5036-9645
Rebecca JerniganSchool of Molecular Sciences and Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, USA.
Christopher J KupitzLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Piotr MajDepartment of Chemistry-BMC, Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-9832-2344
Petra MeszarosDepartment of Chemistry-BMC, Uppsala University, Uppsala, Sweden.
Moona KurttilaNanoscience Center, Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland.ORCID https://orcid.org/0000-0002-7672-5134
Leonardo MonrroyDepartment of Chemistry-BMC, Uppsala University, Uppsala, Sweden.
Fangjia LuoJapan Synchrotron Radiation Research Institute, Hyogo, Japan.ORCID http://orcid.org/0000-0003-0631-6236
Shigeki OwadaJapan Synchrotron Radiation Research Institute, Hyogo, Japan.
Jungmin KangJapan Synchrotron Radiation Research Institute, Hyogo, Japan.ORCID http://orcid.org/0000-0002-3506-6400
Chavdar SlavovDepartment of Chemistry, University of South Florida, Tampa, FL, USA.ORCID http://orcid.org/0000-0001-9441-0243
Michal MajDepartment of Chemistry- Ångström, Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0003-1567-9514
Candice GautierDepartment of Chemistry-BMC, Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-6125-662X
Maithri KashipathyLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Alexandra TolstikovaCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.ORCID http://orcid.org/0000-0003-0653-2123
Valerio MarianiLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Anton BartyCenter for Free-Electron Laser Science, Deutsches Elektronen Synchrotron, Hamburg, Germany.
Frank MossLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
Peter SchwanderDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.ORCID http://orcid.org/0000-0003-2350-8838
Haiguang LiuMicrosoft Research AI4Science, Beijing, China.
Sébastien BoutetLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID http://orcid.org/0000-0003-3928-1244
Petra FrommeSchool of Molecular Sciences and Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, USA.ORCID http://orcid.org/0000-0003-0953-4909
Heikki TakalaNanoscience Center, Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland.ORCID http://orcid.org/0000-0003-2518-8583
Janne A IhalainenNanoscience Center, Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland.ORCID http://orcid.org/0000-0002-8741-1587
Uwe WeierstallDepartment of Physics, Arizona State University, Tempe, AZ, USA.
Sebastian WestenhoffDepartment of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-6961-8015
Emina A StojkovićDepartment of Biology, Northeastern Illinois University, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-4971-5213
Marius SchmidtDepartment of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI, USA. smarius@uwm.edu.ORCID http://orcid.org/0000-0002-0962-9468

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Structural Dynamics at LCLSP41GM139687 · NIGMS · STANFORD UNIVERSITY · PI HUNTER, MARK · 2021 to 2025
$7.5M
NU-STARS for Northeastern Illinois Student Training in Academic Research in the SciencesT34GM105549 · NIGMS · NORTHEASTERN ILLINOIS UNIVERSITY · PI CHURCH, RUTH B, HIBDON, JOSEPH EDWARD · 2014 to 2023
$2.8M
High-Repetition Rate X-ray Detector for the Coherent X-ray Imaging Instrument at LCLSS10OD025079 · OD · STANFORD UNIVERSITY · PI BOUTET, SEBASTIEN · 2018 to 2018
$524k
NIGMS NIH HHS P41 GM103311NIGMS NIH HHS P41 GM139687NIGMS NIH HHS T34 GM105549NIH HHS S10 OD025079NSF | Directorate for Biological Sciences (BIO) 1231306NSF | Directorate for Biological Sciences (BIO) 1231306-6227NSF | Directorate for Biological Sciences (BIO) 1839513NSF | Directorate for Biological Sciences (BIO) 2423601NSF | Directorate for Biological Sciences (BIO) 2423602U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM105549
6 · The paper itself

Abstract

Myxobacteria are non-photosynthetic, soil-dwelling bacteria distinguished by a multicellular stage in their life cycle known as fruiting bodies that are stimulated by light. Myxobacterial phytochromes are candidates for the perception of red-light. The mechanism how light is perceived and converted to a physiological response is unknown. Here, time-resolved serial femtosecond crystallographic (TR-SFX) experiments were conducted on microcrystals of the photosensory core module of the Stigmatella aurantiaca bacteriophytochrome 2 (SaBphP2). Initial events of the Z to E isomerization reaction of the covalently bound, open-chain tetrapyrrole biliverdin (BV) chromophore were determined. At 3 ps after light activation, the BV ring-D assumes a configuration needed for the isomerization. At 100 ps, a mixture of BV in the Z or E configuration is observed in subunit A, while in the other subunit the chromophore remains in the Z configuration. In conjunction with prior results, these structures reveal the molecular mechanism of phytochrome activation in the photomorphogenesis of the myxobacteria and provide the molecular foundation for physiological responses to red light in other bacteria.

Identifiers

PMID40506475
PMCPMC12162953

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.