Evidence map›Paper›PMID 40504906›Full record

ArticleScience (New York, N.Y.)2025

Evolutionary-scale enzymology enables exploration of a rugged catalytic landscape.

Duncan F Muir, Garrison P R Asper, Pascal Notin, Jacob A Posner, Debora S Marks, Michael J Keiser, Margaux M Pinney

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Predicting Enzyme Turnover Numbers and Enabling Rational Enzyme Evolution.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Cold-adapted RNA polymerase fromProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Advances in Machine Learning Models for Predicting Enzyme Kinetic Parameters.Journal of chemical information and modeling · 2026
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Duncan F MuirDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0003-0170-5937
Garrison P R AsperDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.ORCID 0009-0005-6708-2826
Pascal NotinDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-1877-8983
Jacob A PosnerDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.ORCID 0009-0001-6461-8876
Debora S MarksDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-9388-2281
Michael J KeiserDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0002-1240-2192
Margaux M PinneyDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0002-7735-5032

Funding

Making antibody generation rapid, scalable, and democratic through machine learning and continuous evolutionR01CA260415 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI KRUSE, ANDREW, LIU, CHANG C · 2020 to 2024
$8.4M
Leveraging Adaptive Evolution and High-Throughput Techniques to Dissect the Link Between Biochemical Function and FitnessDP5OD033413 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PINNEY, MARGAUX · 2022 to 2025
$2.0M
NCI NIH HHS R01 CA260415NIH HHS DP5 OD033413
6 · The paper itself

Abstract

Quantitatively mapping enzyme sequence-catalysis landscapes remains a critical challenge in understanding enzyme function, evolution, and design. In this study, we leveraged emerging microfluidic technology to measure catalytic constants-

Indexed as

Adenylate KinaseEvolution, MolecularBiocatalysisCatalytic DomainKineticsMutationPhylogenyProtein DomainsAdenylate Kinase

Identifiers

PMID40504906
PMCPMC12333904

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.