Evidence map›Paper›PMID 40504688›Full record

ArticleCell reports2025

Regulation of epigenetics and chromosome structure by human ORC2.

Zhangli Su, Mengxue Tian, Etsuko Shibata, Yoshiyuki Shibata, Tianyi Yang, Zhenjia Wang, Fulai Jin, Chongzhi Zang, Anindya Dutta

Erratum issuedAbstract read
In one paragraph

Article in Cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Zhangli SuDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL 35233, USA. Electronic address: zsu@uab.edu.
Mengxue TianCenter for Public Health Genomics, University of Virginia School of Medicine, Charlottesville, VA 22908, USA.
Etsuko ShibataDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL 35233, USA.
Yoshiyuki ShibataDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL 35233, USA.
Tianyi YangDepartment of Genetics and Genome Sciences, School of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA.
Zhenjia WangCenter for Public Health Genomics, University of Virginia School of Medicine, Charlottesville, VA 22908, USA.
Fulai JinDepartment of Genetics and Genome Sciences, School of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA; Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH 44106, USA.
Chongzhi ZangCenter for Public Health Genomics, University of Virginia School of Medicine, Charlottesville, VA 22908, USA. Electronic address: cz3d@virginia.edu.
Anindya DuttaDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL 35233, USA. Electronic address: duttaa@uab.edu.

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI Amar Desai · 1987 to 2026
$142.3M
The role of MCM8-9 in genomic instability of cancersR01CA060499 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Anindya Dutta · 1994 to 2026
$8.6M
Robust mapping of chromatin loops from sparse or single cell Hi-C data with DeepLoopR01HG009658 · NHGRI · CASE WESTERN RESERVE UNIVERSITY · PI Fulai Jin · 2017 to 2026
$5.1M
Integrative computational models for functional epigenomics and transcriptional regulationR35GM133712 · NIGMS · UNIVERSITY OF VIRGINIA · PI Chongzhi Zang · 2019 to 2026
$3.4M
STAG2 mutations and 3D genome organization in glioblastoma multiformeR01CA267872 · NCI · GEORGETOWN UNIVERSITY · PI Fulai Jin, TODD A WALDMAN · 2022 to 2026
$2.7M
Mapping heritable chromatin loop variants with allele-specific Hi-C analysisR01HG012384 · NHGRI · CASE WESTERN RESERVE UNIVERSITY · PI Alan D Attie, Fulai Jin · 2023 to 2026
$2.6M
Understanding the variation of induced β-cell differentiation.R01DK131437 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI JIN, FULAI, LI, YAN · 2022 to 2025
$2.4M
Simultaneous mapping of somatic mosaicism and kb-resolution 3D genome in single cells.UG3NS132061 · NINDS · CASE WESTERN RESERVE UNIVERSITY · PI JIN, FULAI, LI, YAN · 2023 to 2024
$805k
The role of small RNA modifications in gliomaR00CA259526 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SU, ZHANGLI · 2023 to 2025
$708k
NCI NIH HHS P30 CA043703NCI NIH HHS R00 CA259526NCI NIH HHS R01 CA060499NCI NIH HHS R01 CA267872NHGRI NIH HHS R01 HG009658NHGRI NIH HHS R01 HG012384NIDDK NIH HHS R01 DK131437NIGMS NIH HHS R35 GM133712NINDS NIH HHS UG3 NS132061
6 · The paper itself

Abstract

We report a multi-omics study in a human cell line with mutations in three subunits of origin-recognition complex (ORC). Although the ORC subunits should bind DNA as part of a common six-subunit ORC, there are thousands of sites in the genome where one subunit binds but not another. DNA-bound ORC2 compacts chromatin and attracts repressive histone marks to focal areas of the genome, but ORC2 also activates chromatin at many sites and protects the genes from repressive marks. These epigenetic changes regulate hundreds of genes, including some epigenetic regulators, adding an indirect mechanism by which ORC2 regulates epigenetics without local binding. DNA-bound ORC2 also prevents the acquisition of CTCF at focal sites in the genome to regulate chromatin loops and indirectly affect epigenetics. Thus, individual ORC subunits may bind to DNA to act as epigenetic and chromosome structure regulators independent of the role of the six-subunit ORC in DNA replication.

Indexed as

Epigenesis, GeneticOrigin Recognition ComplexCCCTC-Binding FactorChromatinDNAHistonesHumansProtein BindingCCCTC-Binding FactorChromatinDNAHistonesORC2 protein, humanOrigin Recognition ComplexCP: GenomicsCP: Molecular biologyCTCFDNA replicationepigeneticsgene regulationgenomicsHi-Chigher-order chromatin organizationhistone modificationsORCorigin-recognition complex

Identifiers

PMID40504688
PMCPMC12360442

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.