Evidence map›Paper›PMID 40504538›Full record

ReviewGigaScience2025

Artificial intelligence: the human response to approach the complexity of big data in biology.

Giovanni Melandri, Georges R-Radohery, Chloé Beaumont, Sara M de Cripan, Coralie Muller, Luca Piras, Maria Alcina Pereira, Andreia Ferreira Salvador, Xavier Domingo-Almenara, Marie Bolger and 5 more

Abstract readReview
In one paragraph

Review in GigaScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Machine Learning in Nonhuman Primate Models of Infectious Diseases: Current Applications and Future Perspectives.Journal of the American Association for Laboratory Animal Science : JAALAS · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Giovanni MelandriUniversity of Bordeaux, INRAE, UMR 1332 BFP, Villenave d'Ornon 33140, France.ORCID 0000-0002-0877-5009
Georges R-RadoheryUniversity of Bordeaux, INRAE, UMR 1332 BFP, Villenave d'Ornon 33140, France.ORCID 0000-0003-1405-3106
Chloé BeaumontUniversity of Bordeaux, INRAE, UMR 1332 BFP, Villenave d'Ornon 33140, France.ORCID 0009-0002-3291-6753
Sara M de CripanCentre for Omics Sciences (COS), Eurecat-Technology Centre of Catalonia & Rovira i Virgili University Joint Unit, Unique Scientific and Technical Infrastructures (ICTS), Reus, Catalonia 43204, Spain.ORCID 0000-0002-2565-7864
Coralie MullerUniversity of Bordeaux, INRAE, UMR 1332 BFP, Villenave d'Ornon 33140, France.ORCID 0000-0002-5186-1666
Luca PirasEURECAT-Technology Centre of Catalonia, Barcelona, Catalonia 08005, Spain.ORCID 0000-0001-5135-0172
Maria Alcina PereiraCentre of Biological Engineering, University of Minho, 4704-553 Braga, Portugal.ORCID 0000-0002-7110-1779
Andreia Ferreira SalvadorCentre of Biological Engineering, University of Minho, 4704-553 Braga, Portugal.ORCID 0000-0001-6037-4248
Xavier Domingo-AlmenaraCentre for Omics Sciences (COS), Eurecat-Technology Centre of Catalonia & Rovira i Virgili University Joint Unit, Unique Scientific and Technical Infrastructures (ICTS), Reus, Catalonia 43204, Spain.ORCID 0000-0002-0133-6863
Marie BolgerInstitute of Bio- and Geosciences, IBG-4: Bioinformatics, Forschungszentrum Jülich, CEPLAS, BioSC, Jülich 52429, Germany.ORCID 0000-0001-6335-1578
Sophie ColombiéUniversity of Bordeaux, INRAE, UMR 1332 BFP, Villenave d'Ornon 33140, France.ORCID 0000-0002-9810-4339
Sylvain PrigentUniversity of Bordeaux, INRAE, UMR 1332 BFP, Villenave d'Ornon 33140, France.ORCID 0000-0001-5146-0347
Biotza Gutierrez ArechederraEURECAT-Technology Centre of Catalonia, Barcelona, Catalonia 08005, Spain.ORCID 0000-0001-7411-2580
Nuria Canela CanelaCentre for Omics Sciences (COS), Eurecat-Technology Centre of Catalonia & Rovira i Virgili University Joint Unit, Unique Scientific and Technical Infrastructures (ICTS), Reus, Catalonia 43204, Spain.ORCID 0000-0003-0261-2396
Pierre PétriacqUniversity of Bordeaux, INRAE, UMR 1332 BFP, Villenave d'Ornon 33140, France.ORCID 0000-0001-8151-7420

Funding

Agence Nationale de la Recherche ANR-11-INBS-0010Agence Nationale de la Recherche ANR-11-INBS-0012Agence Nationale de la Recherche ANR-21-ESRE-0035Agence Nationale de la Recherche ANR-24-INBS-0012Horizon 2020
6 · The paper itself

Abstract

Since the late 2010s, artificial intelligence (AI), encompassing machine learning and propelled by deep learning, has transformed life science research. It has become a crucial tool for advancing the computational analysis of biological processes, the discovery of natural products, and the study of ecosystem dynamics. This review explores how the rapid increase in high-throughput omics data acquisition has driven the need for AI-based analysis in life sciences, with a particular focus on plant sciences, animal sciences, and microbiology. We highlight the role of omics-based predictive analytics in systems biology and innovative AI-based analytical approaches for gaining deeper insights into complex biological systems. Finally, we discuss the importance of FAIR (findable, accessible, interoperable, reusable) principles for omics data, as well as the future challenges and opportunities presented by the increasing use of AI in life sciences.

Indexed as

Artificial IntelligenceBig DataComputational BiologySystems BiologyAnimalsDeep LearningHumansMachine Learningartificial intelligencebiologydeep learninglife sciencemachine learningomics

Identifiers

PMID40504538
PMCPMC12160488

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.