Evidence map›Paper›PMID 40504268›Full record

ArticleMarine biotechnology (New York, N.Y.)2025

Transcription Dynamics and DNA Methylation Responses to Growth Modification.

Kris A Christensen, Étienne Collette, Danielle Perley, Dionne Sakhrani, Annette F Muttray, Rosalind A Leggatt, Carlo A Biagi, Ben F Koop, Robert H Devlin

Abstract read
In one paragraph

Article in Marine biotechnology (New York, N.Y.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kris A ChristensenFisheries and Oceans Canada, West Vancouver, BC, Canada. kris.christensen@wsu.edu.
Étienne ColletteCanadian Centre for Computational Genomics (C3G), Montréal, QC, Canada.
Danielle PerleyCanadian Centre for Computational Genomics (C3G), Montréal, QC, Canada.
Dionne SakhraniFisheries and Oceans Canada, West Vancouver, BC, Canada.
Annette F MuttrayFisheries and Oceans Canada, West Vancouver, BC, Canada.
Rosalind A LeggattFisheries and Oceans Canada, West Vancouver, BC, Canada.
Carlo A BiagiFisheries and Oceans Canada, West Vancouver, BC, Canada.
Ben F KoopUniversity of Victoria, Victoria, BC, Canada.
Robert H DevlinFisheries and Oceans Canada, West Vancouver, BC, Canada.

Funding

Genome British Columbia EPIC4 (Enhanced Production in Coho: Culture, Community, Catch)
6 · The paper itself

Abstract

To better understand how gene transcription is controlled under different physiological and environmental conditions, we assessed transcription and methylation responses in a vertebrate system (salmon) where growth can be manipulated in response to growth hormone transgenesis or under satiated, feed-deprived, and re-fed experimental conditions. In both transgenic and non-transgenic liver tissue, methylation of gene promoters was negatively associated with transcription at all measured times. However, the changes in promoter methylation among time-points did not generally correlate with changes in gene transcription among treatments. The results from this study suggest that only a subset of genes are readily responsive to changes in promoter methylation for a given environmental shift such as feed-deprivation or a physiological shift such as growth hormone transgenesis (i.e., genotype-by-environment interactions). The present study also reveals the complexity of how one tissue responds to alterations in internal changes in physiology (growth modification by growth hormone transgenesis; genotype), external environmental conditions (food availability; environment), and their interactions (genotype-by-environment effects).

Indexed as

DNA MethylationGrowth HormoneTranscription, GeneticAnimalsAnimals, Genetically ModifiedGenotypeLiverPromoter Regions, GeneticGrowth HormoneEpigeneticFeed-deprivationGene regulationGrowth hormonePromoterTransgenic

Identifiers

PMID40504268
PMCPMC12162792

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.