Evidence map›Paper›PMID 40504150›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

SARS-CoV-2 nsp15 enhances viral virulence by subverting host antiviral defenses.

Allen Caobi, Chia-Ming Su, Christian M Beusch, Devin Kenney, Tamarand L Darling, Shuchen Feng, Marc Semaan, Alan Wacquiez, Nathan L Sanders, Ena S Tully and 14 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Allen CaobiDepartment of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.ORCID 0000-0002-2033-0950
Chia-Ming SuDepartment of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.ORCID 0000-0001-9317-5886
Christian M BeuschDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA 30322.
Devin KenneyDepartment of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.
Tamarand L DarlingDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110.
Shuchen FengDepartment of Microbiology and Immunology, Loyola University Chicago Stritch School of Medicine, Maywood, IL 60153.
Marc SemaanDepartment of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.ORCID 0000-0003-3828-9105
Alan WacquiezDepartment of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.
Nathan L SandersThe Pulmonary Center, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.
Ena S TullyDepartment of Biochemistry, Institute for Molecular Virology, Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI 53706.
Da-Yuan ChenDepartment of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.ORCID 0000-0002-1957-3330
Monika EvdokimovaDepartment of Microbiology and Immunology, Loyola University Chicago Stritch School of Medicine, Maywood, IL 60153.
Zhen DingDepartment of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.
Dakota JonesThe Pulmonary Center, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.
Konstantinos-Dionysios AlysandratosThe Pulmonary Center, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.
Joseph P MizgerdNational Emerging Infectious Diseases Laboratories, Boston University, Boston, MA 02118.
Robert N KirchdoerferDepartment of Biochemistry, Institute for Molecular Virology, Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI 53706.ORCID 0000-0002-5974-2709
Darrell N KottonThe Pulmonary Center, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.ORCID 0000-0002-9604-8476
Florian DouamNational Emerging Infectious Diseases Laboratories, Boston University, Boston, MA 02118.
Nicholas A CrosslandNational Emerging Infectious Diseases Laboratories, Boston University, Boston, MA 02118.ORCID 0000-0003-3873-9188
Adrianus C M BoonDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110.ORCID 0000-0002-4700-8224
David E GordonDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA 30322.
Susan C BakerDepartment of Microbiology and Immunology, Loyola University Chicago Stritch School of Medicine, Maywood, IL 60153.ORCID 0000-0001-6485-8143
Mohsan SaeedDepartment of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118.ORCID 0000-0001-8505-7054

Funding

BIOLOGY OF THE LUNG--MULTIDISCIPLINARY PROGRAMT32HL007035 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI Darrell N. Kotton, JOSEPH P MIZGERD · 1985 to 2026
$24.3M
Patient-specific iPSCs to model and treat the inception of pulmonary fibrosisP01HL170952 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI ANDREW A WILSON · 2024 to 2026
$11.4M
Experimental Immunology Training GrantT32AI007508 · NIAID · LOYOLA UNIVERSITY CHICAGO · PI KNIGHT, KATHERINE L. · 1997 to 2022
$4.0M
Pulmonary pathophysiology sub-phenotypes of pneumoniaR01AI162850 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI JOSEPH P MIZGERD · 2022 to 2026
$4.0M
Investigating Interferon Antagonists in Delaying Innate Immune Responses to SARS-CoV-2R01AI159945 · NIAID · LOYOLA UNIVERSITY CHICAGO · PI BAKER, SUSAN C. · 2021 to 2025
$4.0M
NATIONAL BIOREPOSITORY OF LUNG DISEASE-SPECIFIC HUMAN INDUCED PLURIPOTENT STEM CELLS:THE PURPOSE OF THIS RESOURCE IS TO BUILD AND SUPPORT A CRITICAL75N92020C00005 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI N/A, N/A · 2021 to 2024
$2.6M
Fibrin in the Infected LungR01HL171499 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI JOSEPH P MIZGERD · 2024 to 2026
$2.3M
Utilizing induced pluripotent stem cells to study the role of alveolar type 2 cell dysfunction in pulmonary fibrosisK08HL163494 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI Konstantinos Alysandratos · 2023 to 2026
$649k
Vectra Polaris Quantitative Pathology Imaging SystemS10OD030269 · OD · BOSTON UNIVERSITY MEDICAL CAMPUS · PI CROSSLAND, NICHOLAS ALEXANDER · 2021 to 2021
$402k
Ventana Discovery Ultra Research Autostainer: an Ex+ Core serviceS10OD026983 · OD · BOSTON UNIVERSITY MEDICAL CAMPUS · PI CROSSLAND, NICHOLAS ALEXANDER · 2019 to 2019
$207k
HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL007035HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL163494HHS | NIH | National Heart, Lung, and Blood Institute (NHLBI) HL170952HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI007508HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI159945NHLBI NIH HHS 75N92020C00005NHLBI NIH HHS K08 HL163494NHLBI NIH HHS P01 HL170952NHLBI NIH HHS R01 HL171499NHLBI NIH HHS T32 HL007035NIAID NIH HHS R01 AI159945NIAID NIH HHS R01 AI162850NIAID NIH HHS T32 AI007508NIH HHS S10 OD026983NIH HHS S10 OD030269
6 · The paper itself

Abstract

SARS-CoV-2 encodes numerous virulence factors, yet their precise mechanisms of action remain unknown. We provide evidence that the SARS-CoV-2 nonstructural protein 15 (nsp15) enhances viral virulence by suppressing the production of viral double-stranded (dsRNA), a potent inducer of antiviral signaling. The viral variants lacking nsp15 endoribonuclease activity elicited higher innate immune responses and exhibited reduced replication in human stem cell-derived lung alveolar type II epithelial cells, as well as in the lungs of infected hamsters. Consistently, these variants caused significantly less weight loss and mortality compared to wild-type (WT) virus in K18-hACE2 mice. Mechanistically, the cells infected with nsp15 mutants accumulated more viral dsRNA, causing enhanced stimulation of the interferon pathway. Chemical inhibition of interferon signaling dampened immune responses to nsp15 mutants and restored their replication to levels similar to the WT virus. These findings indicate that the endoribonuclease activity of nsp15 contributes to viral virulence by limiting the accumulation of viral dsRNA, thereby allowing robust replication with reduced activation of the host innate immune response.

Indexed as

COVID-19SARS-CoV-2Viral Nonstructural ProteinsAnimalsCricetinaeEndoribonucleasesHumansImmunity, InnateInterferonsMiceMutationRNA, Double-StrandedRNA, ViralVirulenceVirus ReplicationEndoribonucleasesInterferonsRNA, Double-StrandedRNA, ViralViral Nonstructural Proteins

Identifiers

PMID40504150
PMCPMC12184426

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.