Evidence map›Paper›PMID 40503901›Full record

ArticlemSystems2025

Late gene regulation by the alternative sigma factors of

Syed M A Rizvi, Asha Densi, Owais R Hakiem, Michael McClelland, Ming Tan

Abstract read
In one paragraph

Article in mSystems, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Syed M A RizviDepartment of Microbiology and Molecular Genetics, University of California Irvine, Irvine, California, USA.ORCID 0000-0003-0867-0589
Asha DensiDepartment of Microbiology and Molecular Genetics, University of California Irvine, Irvine, California, USA.ORCID 0000-0002-1335-6036
Owais R HakiemDepartment of Microbiology and Molecular Genetics, University of California Irvine, Irvine, California, USA.
Michael McClellandDepartment of Microbiology and Molecular Genetics, University of California Irvine, Irvine, California, USA.ORCID 0000-0003-1788-9347
Ming TanDepartment of Microbiology and Molecular Genetics, University of California Irvine, Irvine, California, USA.ORCID 0000-0002-5361-583X

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
UCI P30 Skin Center Systems Biology CoreP30AR075047 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI ANDERSEN, BOGI, GANESAN, ANAND K · 2019 to 2025
$5.1M
Molecular determinants of oxidative stress in Salmonella pathogenesisR01AI136520 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Andres Vazquez-Torres · 2018 to 2026
$3.7M
Late developmental regulation in ChlamydiaR01AI123998 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 2017 to 2020
$1.8M
PacBio RS Single Molecule, Real-Time (SMRT) DNA SequencerS10OD010794 · OD · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 2012 to 2012
$600k
High-Throughput DNA SequencerS10OD021718 · OD · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 2016 to 2016
$600k
Barcoding a Salmonella gene knockout libraryR03AI139557 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI MCCLELLAND, MICHAEL · 2019 to 2020
$157k
National Institute of Food and Agriculture 59-6066-4-005NCI NIH HHS P30 CA062203NIAID NIH HHS R01 AI123998NIAID NIH HHS R01 AI136520NIAID NIH HHS R03 AI139557NIAMS NIH HHS P30 AR075047NIH HHS R01 AI123998NIH HHS R01 AI136520NIH HHS R03 AI139557NIH HHS S10 OD010794NIH HHS S10 OD021718
6 · The paper itself

Abstract

The pathogenic bacterium IMPORTANCE: In this study, we performed chromatin immunoprecipitation-seq to identify genes transcribed by alternative forms of RNA polymerases in

Indexed as

Bacterial ProteinsChlamydia trachomatisGene Expression Regulation, BacterialSigma FactorDNA-Directed RNA PolymerasesHumansPromoter Regions, GeneticBacterial ProteinsDNA-Directed RNA PolymerasesSigma FactorChIP-seqgene expressionregulonRNA polymeraseRNA-seqtranscription

Identifiers

PMID40503901
PMCPMC12282069

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.