Evidence map›Paper›PMID 40502203›Full record

ArticlebioRxiv : the preprint server for biology2025

Cyclo-stationary distributions of mRNA and Protein counts for random cell division times.

Syed Yunus Ali, Aditya Saran, Ashok Prasad, Abhyudai Singh, Dibyendu Das

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Syed Yunus AliDepartment of Physics, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India.ORCID 0000-0002-0185-1873
Aditya SaranDepartment of Physics, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India.
Ashok PrasadSchool of Biomedical and Chemical Engineering, Colorado State University, Fort Collins, Colorado 80521, USA.ORCID 0000-0002-0832-8153
Abhyudai SinghDepartment of Electrical and Computer Engineering, University of Delaware, Newark, DE 19716, USA.ORCID 0000-0002-1451-2838
Dibyendu DasDepartment of Physics, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India.ORCID 0000-0001-8693-5234

Funding

Generalized fluctuation test for deciphering phenotypic switching within cell populationsR35GM148351 · NIGMS · UNIVERSITY OF DELAWARE · PI Abhyudai Singh · 2023 to 2026
$1.6M
NIGMS NIH HHS R35 GM148351
6 · The paper itself

Abstract

There is a long history of using experimental and computational approaches to study noise in single-cell levels of mRNA and proteins. The noise originates from a myriad of factors: intrinsic processes of gene expression, partitioning errors during division, and extrinsic effects, such as, random cell-cycle times. Although theoretical methods are well developed to analytically understand full statistics of copy numbers for fixed or Erlang distributed cell cycle times, the general problem of random division times is still open. For any random (but uncorrelated) division time distribution, we present a method to address this challenging problem and obtain exact series representations of the copy number distributions in the cyclo-stationary state. We provide explicit cell age-specific and age-averaged results, and analyze the relative contribution to noise from intrinsic and extrinsic sources. Our analytical approach will aid the analysis of single-cell expression data and help in disentangling the impact of variability in division times.

Identifiers

PMID40502203
PMCPMC12157499

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.