Evidence map›Paper›PMID 40502195›Full record

ArticlebioRxiv : the preprint server for biology2025

A NOVEL MACHINE LEARNING APPROACH FOR TUMOR DETECTION BASED ON TELOMERIC SIGNATURES.

Priyanshi Shah, Arun Sethuraman

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors.

Priyanshi ShahDepartment of Biology, San Diego State University, San Diego, California, 92182, United States of America.
Arun SethuramanDepartment of Biology, San Diego State University, San Diego, California, 92182, United States of America.ORCID 0000-0002-8201-8292

Funding

The Architecture of Missing and Archaic Variation in Human Population Genomic DataR15GM143700 · NIGMS · CALIFORNIA STATE UNIVERSITY SAN MARCOS · PI AYERS, KIMBERLY · 2021 to 2021
$441k
NIGMS NIH HHS R15 GM143700
6 · The paper itself

Abstract

Cancer remains one of the most complex diseases faced by humanity, with over 200 distinct types, each characterized by unique molecular profiles that demand specialized therapeutic approaches (Tomczak et al., 2015). Prior studies have shown that both short and long telomere lengths are associated with elevated cancer risk, underscoring the intricate relationship between telomere length variation and tumorigenesis (The Telomeres Mendelian Randomization Collaboration et al., 2017). To investigate this relationship, we developed a supervised machine learning model trained on telomeric read content, genomic variants, and phenotypic features to predict tumor status. Using data from 33 cancer types within The Cancer Genome Atlas (TCGA) program, our model achieved an accuracy of 82.62% in predicting tumor status. The trained model is available for public use and further development through the project's GitHub repository: https://github.com/paribytes/TeloQuest. This work represents a novel, multidisciplinary approach to improving cancer diagnostics and risk assessment by integrating telomere biology with Biobank-scale genomic and phenotypic data. Furthermore, we highlight the potential of telomere length variation as a meaningful predictive biomarker in oncology.

Identifiers

PMID40502195
PMCPMC12154757

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.