Evidence map›Paper›PMID 40502056›Full record

ArticlebioRxiv : the preprint server for biology2025

Hydrolysis-dependent severing tunes internal monomeric heterogeneity to shape actin length distributions.

Soumyadipta Ray, Binayak Banerjee, Lishibanya Mohapatra, Dipjyoti Das

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In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Soumyadipta RaySchool of Physics and Astronomy, College of Science, Rochester Institute of Technology, Rochester, NY 14623, USA.
Binayak BanerjeeDepartment of Biological Sciences, Indian Institute of Science Education And Research Kolkata, Mohanpur, Nadia - 741 246 West Bengal, India.
Lishibanya MohapatraSchool of Physics and Astronomy, College of Science, Rochester Institute of Technology, Rochester, NY 14623, USA.
Dipjyoti DasDepartment of Biological Sciences, Indian Institute of Science Education And Research Kolkata, Mohanpur, Nadia - 741 246 West Bengal, India.

Funding

Design Principles of Size-Control of Organelles Growing in a Shared Pool of their Building BlocksR35GM147556 · NIGMS · ROCHESTER INSTITUTE OF TECHNOLOGY · PI Lishibanya Mohapatra · 2022 to 2026
$1.8M
NIGMS NIH HHS R35 GM147556
6 · The paper itself

Abstract

The coordination of actin-binding proteins (ABPs) is essential for forming a wide range of actin structures that drive vital cellular processes. Many of the ABPs, like the severing protein cofilins, exhibit affinities dependent on the nucleotide state of actin monomers. Experiments have shown that cofilins interact with actin filaments cooperatively in a concentration-dependent manner, where it severs less at both low and high concentrations. However, how this nucleotide state-dependent severing influences actin filament distributions is poorly understood. Here, we propose a computational model of actin filament dynamics that combines stochastic polymerization, phosphate release, hydrolysis-dependent cooperative binding of cofilins, and severing of actin monomers. This model simultaneously reproduces key experimentally observed features: The non-monotonic change of the filament length and the monotonic decay in actin cap size with the increasing cofilin concentration, as well as the linear increase of the cap size with the actin concentration. We elucidate how both these emerge from the tuning of the heterogeneity in the arrangement of cofilin decorated and undecorated monomers within a filament. We also predict that, with varying cofilin concentrations, steady-state length distributions can change from symmetric bell-shaped to long-tailed skewe d shapes. We show that, in some regimes, our model simplifies to a coarse-grained model enabling us to mathematically predict that the distribution of undecorated monomers is exponential with a decay exponent that depends on cofilin and actin concentration. This study highlights the importance of non equilibrium processes that can modulate structural heterogeneity within a filament to shape actin length variation.

Identifiers

PMID40502056
PMCPMC12154627

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