Evidence map›Paper›PMID 40501845›Full record

ArticlebioRxiv : the preprint server for biology2025

Scaled multidimensional assays of variant effect identify sequence-function relationships in hypertrophic cardiomyopathy.

Yuta Yamamoto, Kaiser Chua, Alexis Ferrasse, Anna Kirilova, Hannah N De Jong, Brendan J Floyd, Christian Cadisch, Laurens Wiel, Qianru Wang, Matthew J O'Neill and 15 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Yuta YamamotoStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.ORCID 0000-0001-6129-9745
Kaiser ChuaStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.
Alexis FerrasseStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.
Anna KirilovaMedical Scientist Training Program, University of Pittsburgh, Pittsburgh, PA, USA.
Hannah N De JongDepartment of Genetics, Stanford University School of Medicine, Palo Alto, CA, USA.
Brendan J FloydStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.ORCID 0000-0003-3185-0174
Christian CadischStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.
Laurens WielStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.
Qianru WangStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.ORCID 0000-0002-7219-7522
Matthew J O'NeillDepartment of Medicine (Division of Clinical Pharmacology), Vanderbilt University, Medical Center, Nashville, TN, USA.
Daniel TabetDonnelly Centre and Department of Molecular Genetics, University of Toronto; Toronto, ON, Canada.
David StaudtStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.ORCID 0000-0002-3399-9311
John E GoryznskiStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.ORCID 0000-0002-9034-9016
Yong HuangStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.
Rachel H WilsonStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.ORCID 0000-0003-3114-7040
Arman SharmaStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.
Althea TapalesStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.
Rani AgrawalStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.
Matthew T WheelerStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.ORCID 0000-0001-8721-3022
Calum MacRaeBrigham and Women's Hospital, HMS, Boston, MA, USA.ORCID 0000-0001-5181-2664
Dan M RodenDepartment of Medicine (Division of Clinical Pharmacology), Vanderbilt University, Medical Center, Nashville, TN, USA.ORCID 0000-0002-6302-0389
Frederick P RothDonnelly Centre and Department of Molecular Genetics, University of Toronto; Toronto, ON, Canada.
Andrew M GlazerDepartment of Medicine (Division of Clinical Pharmacology), Vanderbilt University, Medical Center, Nashville, TN, USA.ORCID 0000-0002-3938-4713
Euan A AshleyStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.ORCID 0000-0001-9418-9577
Victoria N ParikhStanford Center for Inherited Cardiovascular Disease, Division of Cardiovascular Medicine, Department of Medicine, Stanford School of Medicine, Palo Alto, CA.ORCID 0000-0002-5138-5559

Funding

Stanford Mendelian Genomics Research CenterU01HG011762 · NHGRI · STANFORD UNIVERSITY · PI Jonathan Adam Bernstein, Stephen Montgomery · 2021 to 2026
$16.7M
Systematically mapping variant effects for cardiovascular genesR01HL164675 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ASHLEY, EUAN A, RODEN, DAN M · 2022 to 2025
$8.1M
Pathogenic hotspots illuminate mechanism and therapeutic potential in arrhythmogenic cardiomyopathyR01HL168059 · NHLBI · STANFORD UNIVERSITY · PI Victoria Parikh · 2023 to 2026
$3.0M
High-throughput discovery of disease-associated ion channel variantsR35GM150465 · NIGMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Andrew M. Glazer · 2023 to 2026
$1.8M
The Role of RBM20 Sequence and Expression in Dilated CardiomyopathiesK08HL143185 · NHLBI · STANFORD UNIVERSITY · PI PARIKH, VICTORIA · 2019 to 2023
$725k
NHGRI NIH HHS U01 HG011762NHLBI NIH HHS K08 HL143185NHLBI NIH HHS R01 HL164675NHLBI NIH HHS R01 HL168059NIGMS NIH HHS R35 GM150465
6 · The paper itself

Abstract

Background: An estimated 1 in 500 people live with hypertrophic cardiomyopathy (HCM), a disease for which genetic diagnosis can identify family members at risk, and increasingly guide therapy. Mutations in the myosin binding protein C3 ( Methods: We developed a scaled multidimensional mapping strategy to evaluate the functional impact of variants across a critical domain of MYBPC3. We incorporate saturation base editing at the native Results: Our multidimensional mapping strategy enabled high-resolution functional analysis of Conclusions: This work provides a platform for extending genome engineering in iPSCs to multiplexed assays of variant effects across diverse disease-relevant cellular phenotypes, enhancing the understanding of variant pathogenicity and uncovering novel biological mechanisms that could inform therapeutic strategies.

Identifiers

PMID40501845
PMCPMC12155052

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.