Evidence map›Paper›PMID 40500421›Full record

ArticleNature chemical biology2025

Engineering controllable alteration of malonyl-CoA levels to enhance polyketide production.

Sarah H Klass, Mia Wesselkamper, Aidan E Cowan, Namil Lee, Nathan Lanclos, Seokjung Cheong, Zilong Wang, Yan Chen, Jennifer W Gin, Christopher J Petzold and 1 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Toward Complex Polyketide Biosynthesis inJournal of microbiology and biotechnology · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Engineering an Acyl-CoA Ligase With Enhanced Activity Toward Synthetic CoA Alternatives.Chembiochem : a European journal of chemical biology · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Sarah H KlassJoint BioEnergy Institute, Emeryville, CA, USA.
Mia WesselkamperDepartment of Bioengineering, University of California, Berkeley, Berkeley, CA, USA.
Aidan E CowanJoint BioEnergy Institute, Emeryville, CA, USA.
Namil LeeJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0009-0000-0382-8741
Nathan LanclosJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0000-0003-1995-3883
Seokjung CheongJoint BioEnergy Institute, Emeryville, CA, USA.
Zilong WangJoint BioEnergy Institute, Emeryville, CA, USA.
Yan ChenJoint BioEnergy Institute, Emeryville, CA, USA.
Jennifer W GinJoint BioEnergy Institute, Emeryville, CA, USA.
Christopher J PetzoldJoint BioEnergy Institute, Emeryville, CA, USA.ORCID http://orcid.org/0000-0002-8270-5228
Jay D KeaslingJoint BioEnergy Institute, Emeryville, CA, USA. keasling@berkeley.edu.ORCID http://orcid.org/0000-0003-4170-6088

Funding

National Science Foundation (NSF) 2036849National Science Foundation (NSF) Graduate Research FellowshipU.S. Department of Energy (DOE) DE-AC02-05CH11231
6 · The paper itself

Abstract

Heterologous expression of polyketide synthase (PKS) genes in Escherichia coli has enabled the production of various valuable natural and synthetic products. However, the limited availability of malonyl-CoA (M-CoA) in E. coli remains a substantial impediment to high-titer polyketide production. Here we address this limitation by disrupting the native M-CoA biosynthetic pathway and introducing an orthogonal pathway comprising a malonate transporter and M-CoA ligase, enabling efficient M-CoA biosynthesis under malonate supplementation. This approach substantially increases M-CoA levels, enhancing fatty acid and polyketide titers while reducing the promiscuous activity of PKSs toward undesired acyl-CoA substrates. Subsequent adaptive laboratory evolution of these strains provides insights into M-CoA regulation and identifies mutations that further boost M-CoA and polyketide production. This strategy improves E. coli as a host for polyketide biosynthesis and advances understanding of M-CoA metabolism in microbial systems.

Indexed as

Escherichia coliMalonyl Coenzyme AMetabolic EngineeringPolyketidesCoenzyme A LigasesMalonatesPolyketide SynthasesCoenzyme A LigasesMalonatesmalonic acidMalonyl Coenzyme APolyketidesPolyketide Synthases

Identifiers

PMID40500421
PMCPMC12303837

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.