Evidence map›Paper›PMID 40497734›Full record

ArticlemBio2025

Targeting the interaction between long noncoding RNA XR_001779380 and Prdm1 to enhance IFN-γ immunity in murine neonatal intestinal epithelial cells.

Kehua Jin, Ai-Yu Gong, Shuhong Wang, Gislaine A Martins, Juliane K Strauss-Soukup, Roberta M O'Connor, Xian-Ming Chen

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kehua JinDepartment of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, Illinois, USA.
Ai-Yu GongDepartment of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, Illinois, USA.
Shuhong WangDepartment of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, Illinois, USA.
Gislaine A MartinsDepartments of Medicine and Biomedical Sciences, Research Division of Immunology Cedars-Sinai Medical Center, David Geffen School of Medicine, University of California-Los Angeles, Los Angeles, California, USA.
Juliane K Strauss-SoukupDepartment of Chemistry and Biochemistry, Creighton University College of Arts and Sciences, Omaha, Nebraska, USA.
Roberta M O'ConnorVeterinary and Biomedical Sciences, College of Veterinary Medicine, University of Minnesota, St. Paul, Minnesota, USA.
Xian-Ming ChenDepartment of Microbial Pathogens and Immunity, Rush University Medical Center, Chicago, Illinois, USA.ORCID 0000-0001-9848-2244

Funding

Molecular Basis of Intestinal CryptosporidiosisR01AI116323 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI CHEN, XIAN-MING · 2015 to 2025
$4.2M
LincRNAs in Mucosal Defense to AIDS Opportunistic Pathogen CryptosporidiumR01AI136877 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI CHEN, XIAN-MING · 2018 to 2022
$1.9M
LncRNA regulation of Type I IFN signaling in intestinal epitheliumR21AI156370 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI CHEN, XIAN-MING · 2021 to 2022
$432k
m6A methylation of IRGM transcripts in epithelial-Cryptosporidium interactionsR21AI177188 · NIAID · RUSH UNIVERSITY MEDICAL CENTER · PI CHEN, XIAN-MING · 2024 to 2025
$429k
National Institute of Allergy and Infectious Diseases AI116323National Institute of Allergy and Infectious Diseases AI136877National Institute of Allergy and Infectious Diseases AI156370National Institute of Allergy and Infectious Diseases AI177188NIAID NIH HHS R01 AI116323NIAID NIH HHS R01 AI136877NIAID NIH HHS R21 AI156370NIAID NIH HHS R21 AI177188
6 · The paper itself

Abstract

Intestinal epithelial cells (IECs) serve as the front line of host defense in the intestine, with IFN signaling playing a critical role in regulating epithelial cell-intrinsic defense against intracellular pathogens. However, IFN-γ-mediated antimicrobial defense is usually reduced in the gastrointestinal tract in infants, and the underlying mechanisms remain unclear. We previously observed that the lncRNA XR_001779380 promotes IFN-γ-stimulated gene transcription in murine IECs. Interestingly, its interaction with Prdm1, a DNA-binding protein expressed in the neonatal but not adult intestinal epithelium, attenuates IFN-γ-stimulated gene transcription, thereby contributing to suppression of IFN-γ-mediated, epithelial cell-intrinsic defense in the neonatal intestine. In this study, we further investigated the role of Prdm1 in suppressing IFN-γ response in murine neonatal IECs. Additionally, we explored the development of specific antisense oligonucleotides to interfere with XR_001779380-Prdm1 interaction to promote IFN-γ response in IECs. Our data show that Prdm1 suppresses IFN-γ-mediated gene transcription, and its induction inhibits IFN-γ-stimulated cell-intrinsic defense against

Indexed as

Epithelial CellsInterferon-gammaIntestinal MucosaPositive Regulatory Domain I-Binding Factor 1RNA, Long NoncodingAnimalsAnimals, NewbornMiceMice, Inbred C57BLInterferon-gammaPositive Regulatory Domain I-Binding Factor 1Prdm1 protein, mouseRNA, Long Noncodingantisense oligonucleotidesCryptosporidiumIFN-gammainnate defenseintestinal epitheliumLncRNAsneonatesPias1Prdm1Swi/Snf

Identifiers

PMID40497734
PMCPMC12239576

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.