Evidence map›Paper›PMID 40497694›Full record

ArticleJournal of chemical information and modeling2025

Hypershape Recognition: A General Framework for Moment-Based Molecular Similarity.

Marcello Costamagna, Marco Foscato, David Grellscheid, Vidar R Jensen

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marcello CostamagnaDepartment of Chemistry, University of Bergen, Allégaten 41, Bergen N-5007, Norway.ORCID 0009-0000-6382-5366
Marco FoscatoDepartment of Chemistry, University of Bergen, Allégaten 41, Bergen N-5007, Norway.ORCID 0000-0001-7762-6931
David GrellscheidDepartment of Informatics, University of Bergen, Thormøhlensgate 55b, Bergen N-5006, Norway.
Vidar R JensenDepartment of Chemistry, University of Bergen, Allégaten 41, Bergen N-5007, Norway.ORCID 0000-0003-2444-3220

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Due to the widespread use of molecular similarity assessments in drug design, numerous methods for the calculation of similarity scores of organic molecules have been developed. When applied to other types of molecules, such as inorganic and organometallic compounds, these methods face significant challenges. To overcome these challenges, we here introduce Hypershape Recognition (HSR), a versatile framework for moment-based similarity assessment of three-dimensional (3D) chemical representations annotated with atomic features. In a default, general-purpose, implementation of the framework, features containing information about the atomic number, the isotope (the number of neutrons), and the formal charge of each atom are combined with its Cartesian coordinates to form the

Indexed as

Models, Molecular

Identifiers

PMID40497694
PMCPMC12199306

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.