Evidence map›Paper›PMID 40493742›Full record

ArticleThe Plant cell2025

Pancentromere analysis of Allium species reveals diverse centromere positions in onion and gigantic centromeres in garlic.

Kiyotaka Nagaki, Koichiro Ushijima, Takashi Akagi, Keisuke Tanaka, Hisato Kobayashi

Abstract read
In one paragraph

Article in The Plant cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Dual Roads of CENP-A for Centromere Identification.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  2. Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kiyotaka NagakiInstitute of Plant Science and Resources, Okayama University, Kurashiki 710-0046, Japan.ORCID 0000-0001-9267-4106
Koichiro UshijimaGraduate School of Environmental and Life Science, Okayama University, Okayama 710-8530, Japan.ORCID 0000-0003-3904-5663
Takashi AkagiGraduate School of Environmental and Life Science, Okayama University, Okayama 710-8530, Japan.ORCID 0000-0001-9993-8880
Keisuke TanakaNODAI Genome Research Center, Tokyo University of Agriculture, Setagaya 156-8502, Japan.ORCID 0000-0003-0658-7781
Hisato KobayashiNODAI Genome Research Center, Tokyo University of Agriculture, Setagaya 156-8502, Japan.ORCID 0000-0003-3800-4691

Funding

Cooperative Research Grant of the Genome Research for BioResourcesNODAI Genome Research CenterTokyo University of Agriculture
6 · The paper itself

Abstract

In eukaryotes, centromeres interact with the kinetochore for distribution of genetic information in cell division, yet their sequence and size are diverse among species. However, their position on chromosomes is considered to be conserved within a species. In this study, we analyzed the centromeres of 3 Allium species, namely, Welsh onion (Allium fistulosum), onion (Allium cepa), and garlic (Allium sativum) via pancentromere analysis and repetitive sequence analysis of centromeres and their neighborhoods and revealed their mobility, sequence organization, and size. Among the 3 species, Welsh onion and garlic had stable centromeres, but the onion centromere appeared to be polymorphic and frequently differed in position by up to 28.0 Mb among cultivars and between multiple individuals of the same cultivar. This mobility was stabilized by hybridization with Welsh onions. Furthermore, these 3 species have very different centromere sequence organization, including differences in the existence and maturity of centromeric satellites, and differences in centromere size, with Welsh onion having a centromere of 1.9 Mb, and garlic having a centromere of ∼10.6 Mb, the largest of any organism with monocentric chromosomes analyzed to date. Our pancentromere analysis of these Allium species reveals the variation in sequence organization, size, and position of this important chromosomal region.

Indexed as

AlliumCentromereChromosomes, PlantGarlicOnionsDNA, SatelliteIn Situ Hybridization, FluorescenceSpecies SpecificityDNA, Satellite

Identifiers

PMID40493742
PMCPMC12290882

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.