Evidence map›Paper›PMID 40493706›Full record

ArticleJournal of the American Chemical Society2025

In-Cell Approach to Evaluate E3 Ligases for Use in Targeted Protein Degradation.

Yunan Zheng, Anamika Singh, Zeqi Niu, Violeta Marin, Jonathon Young, Paul Richardson, Marcus L Hemshorn, Richard B Cooley, P Andrew Karplus, Kedar Puvar and 4 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Protein engineering: status report.Protein engineering, design & selection : PEDS · 2026
    Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yunan ZhengTechnology & Therapeutic Platforms, AbbVie Inc., North Chicago, Illinois 60064, United States.
Anamika SinghDepartment of Biochemistry and Biophysics and GCE4All Research Center, Oregon State University, Corvallis, Oregon 97331, United States.
Zeqi NiuTechnology & Therapeutic Platforms, AbbVie Inc., North Chicago, Illinois 60064, United States.ORCID 0000-0002-9025-616X
Violeta MarinTechnology & Therapeutic Platforms, AbbVie Inc., North Chicago, Illinois 60064, United States.
Jonathon YoungTechnology & Therapeutic Platforms, AbbVie Inc., North Chicago, Illinois 60064, United States.
Paul RichardsonTechnology & Therapeutic Platforms, AbbVie Inc., North Chicago, Illinois 60064, United States.
Marcus L HemshornDepartment of Biochemistry and Biophysics and GCE4All Research Center, Oregon State University, Corvallis, Oregon 97331, United States.
Richard B CooleyDepartment of Biochemistry and Biophysics and GCE4All Research Center, Oregon State University, Corvallis, Oregon 97331, United States.ORCID 0000-0003-3928-2757
P Andrew KarplusDepartment of Biochemistry and Biophysics and GCE4All Research Center, Oregon State University, Corvallis, Oregon 97331, United States.
Kedar PuvarTechnology & Therapeutic Platforms, AbbVie Inc., North Chicago, Illinois 60064, United States.
Scott E WarderTechnology & Therapeutic Platforms, AbbVie Inc., North Chicago, Illinois 60064, United States.
Anil VasudevanTechnology & Therapeutic Platforms, AbbVie Inc., North Chicago, Illinois 60064, United States.ORCID 0000-0002-0004-0497
Justin M ReitsmaTechnology & Therapeutic Platforms, AbbVie Inc., North Chicago, Illinois 60064, United States.ORCID 0000-0002-2700-6440
Ryan A MehlDepartment of Biochemistry and Biophysics and GCE4All Research Center, Oregon State University, Corvallis, Oregon 97331, United States.ORCID 0000-0003-2932-4941

Funding

The GCE4All Center: Unleashing the Potential of Genetic Code Expansion for Biomedical ResearchRM1GM144227 · NIGMS · OREGON STATE UNIVERSITY · PI RYAN A MEHL · 2022 to 2026
$6.2M
Ion Mobility Time-of-flight Mass Spectrometry SystemS10RR025628 · NCRR · OREGON STATE UNIVERSITY · PI MAIER, CLAUDIA S, STEVENS, JAN FREDERIK · 2009 to 2009
$440k
NCRR NIH HHS S10 RR025628NIGMS NIH HHS RM1 GM144227
6 · The paper itself

Abstract

A major challenge in evaluating the suitability of ∼700 known and putative E3 ligases for target protein degradation (TPD) is the lack of ligase-specific binders. Here, we use genetic code expansion (GCE) to express in living cells an E3 ligase with a site-specifically encoded, tetrazine-containing noncanonical amino acid (Tet-ncAA). Then, using click chemistry, we conjugate the incorporated Tet with a strained

Indexed as

ProteolysisProteolysis Targeting ChimeraUbiquitin-Protein LigasesAdaptor Proteins, Signal TransducingAmino AcidsBromodomain Containing ProteinsClick ChemistryCyclooctanesGenetic CodeHEK293 CellsHumansNuclear ProteinsRepressor ProteinsTranscription FactorsAdaptor Proteins, Signal TransducingAmino AcidsBRD2 protein, humanBromodomain Containing ProteinsCRBN protein, humanCyclooctanesNuclear ProteinsProteolysis Targeting ChimeraRepressor ProteinsSPOP protein, humanTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID40493706
PMCPMC12684378

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.