Evidence map›Paper›PMID 40493619›Full record

ArticlePloS one2025

The diagnostic accuracy of nanopore sequencing in Tuberculous Lymphadenitis: Systematic review and meta-analysis protocol.

Liwei Yao, Caifang Bu, Lijun Xiang

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Liwei YaoDepartment of Nursing, Hangzhou Red Cross Hospital, Hangzhou, Zhejiang, China.
Caifang BuDepartment of Nursing, Hangzhou Red Cross Hospital, Hangzhou, Zhejiang, China.
Lijun XiangDepartment of Nursing, Hangzhou Red Cross Hospital, Hangzhou, Zhejiang, China.ORCID 0009-0005-4015-8499

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTuberculous lymphadenitis (TL) is a common case of extrapulmonary tuberculosis caused by Mycobacterium tuberculosis (MTB). The current use of nanopore sequencing in TL is limited. The aim of our study is to complete a systematic review and meta-analysis protocol to assess the performance of nanopore sequencing in TL.

methodsEnglish databases (including Medline via PubMed, Cochrane Library, and Embase) and Chinese databases (including Wanfang Database and China National Knowledge Infrastructure) will be searched for literature related to the research topic. We designed eligibility criteria based on PICT (Population, Index Test, Comparator Test and Target Condition). We will extract relevant data from the included articles when they have been identified. The quality of the studies will be assessed using the Quality Assessment of Diagnostic Accuracy Studies (QUADAS-2) tool. We will use midas package in STATA for the calculation of the pooled effect values and the corresponding forest plots when the final number of included studies is more than four, and Meta-DiSc for the calculation of the pooled effect values and the forest plots when the number of included studies is less than four. When the results of different reference gold standards are reported simultaneously in the same literature, we will extract the corresponding TP, FP, FN, and TN values according to the different reference gold standards and analyze them independently. I2 statistic will be used to quantify inter-study heterogeneity. If substantial heterogeneity (I² > 50%) is detected, potential sources will be investigated through subgroup, meta-regression, and sensitivity analysis.

conclusionWe conducted this protocol according to the guidelines and submitted it to a peer-reviewed journal to improve our protocol through peer review and ultimately better guide the completion of the systematic review and meta-analysis. SYSTEMATIC REVIEW REGISTRATION: PROSPERO Registration number: CRD42024595521.

Indexed as

Mycobacterium tuberculosisNanopore SequencingTuberculosis, Lymph NodeHumansMeta-Analysis as TopicSystematic Reviews as Topic

Identifiers

PMID40493619
PMCPMC12151422

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.