Evidence map›Paper›PMID 40493039›Full record

ArticleThe Journal of chemical physics2025

Efficient and scalable electrostatics via spherical grids and treecode summation.

Andrew C Simmonett, Bernard R Brooks, Thomas A Darden

Abstract read
In one paragraph

Article in The Journal of chemical physics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Andrew C SimmonettLaboratory of Computational Biology, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.ORCID 0000-0002-5921-9272
Bernard R BrooksLaboratory of Computational Biology, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.ORCID 0000-0002-3586-2730
Thomas A DardenOpenEye Scientific Software, Santa Fe, New Mexico 87508, USA.

Funding

Development Of Advanced Computer Hardware And SoftwareZIHHL001052 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI BROOKS, BERNARD R · 2009 to 2025
$12.2M
Theoretical Methods to Study Biological MacromoleculesZ01HL001051 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI BROOKS, BERNARD R · 1998 to 2008
$1.4M
DEVELOPMENT OF ADVANCED COMPUTER HARDWARE AND SOFTWAREZ01HL001052 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI BROOKS, BERNARD R · 1998 to 2008
$617k
Intramural NIH HHS Z01 HL001051Intramural NIH HHS Z01 HL001052Intramural NIH HHS ZIH HL001052
6 · The paper itself

Abstract

Evaluation of noncovalent electrostatic interactions is the dominant bottleneck in classical molecular dynamics simulations, and evaluation of Coulombic matrix elements similarly limits quantum mechanical self-consistent field calculations. These difficulties are a result of the Coulomb operator's slow decay, which necessitates the evaluation of large numbers of interactions. In this work, we use a combination of cubature techniques to factorize the Coulomb operator and devise a hierarchical summation scheme, arriving at a novel technique that requires O(N⁡log(N)) effort to evaluate electrostatic interactions. The factorization may be made arbitrarily accurate, allowing full control between computational expense and accuracy. By avoiding the fast Fourier transform to evaluate terms, the resulting algorithm bears a resemblance to that of the fast multipole method and offers many opportunities for highly scalable parallel implementations.

Identifiers

PMID40493039
PMCPMC12158466

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.