Evidence map›Paper›PMID 40491232›Full record

ArticleMicrobial biotechnology2025

Revisiting D-Acylases for D-Amino Acid Production.

Sergio Martínez-Rodríguez, Jose Antonio Gavira

Abstract read
In one paragraph

Article in Microbial biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Recent progress in microbial production of D-aspartate.World journal of microbiology & biotechnology · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Sergio Martínez-RodríguezDepartment of Biochemistry and Molecular Biology III and Immunology, University of Granada, Granada, Spain.ORCID https://orcid.org/0000-0001-6675-1550
Jose Antonio GaviraRaw Materials, Human and Environmental Health, UGR, Associated Unit of the CSIC by the IACT-CSIC, Armilla, Granada, Spain.ORCID https://orcid.org/0000-0002-7386-6484

Funding

Consejería de Universidad, Investigación e Innovación and ERDF Andalusia Program 2021-2027 C-EXP-120-UGR23ERDF Andalusia Program 2021-2027Funding for open access charge: Universidad de Granada/CBUAMinisterio de Ciencia e Innovación Grant PID2020-116261GB-I00/AEI/10.13039/5011000110Ministerio de Ciencia e Innovación PID2020-116261GB-I00
6 · The paper itself

Abstract

N-Acyl-D-amino acid deacylases (EC 3.5.1.81, also known as D-acylases) have been studied for decades for their utility in the kinetic resolution of N-acetyl-D,L-amino acids (NAAs) due to a marked stereospecificity. In conjunction with an N-succinyl-amino acid racemase (NSAR), they impulse the dynamic kinetic resolution (DKR) of different NAAs until the corresponding enantiomerically pure D-amino acids. Besides the clear interest in this enzyme cascade, the application of D-acylase/NSAR tandems has been only briefly described outside the industrial field. In this work, we revisit D-acylases for the DKR of NAAs, reporting the characterisation of two new recombinant D-acylases belonging to Bordetella petrii and Klebsiella pneumoniae. The enzymes were successfully coupled with the recombinant NSAR from Geobacillus stearothermophilus for the biosynthesis of D-methionine or D-aminobutyric acid. We also carried out the structural characterisation of the D-acylase from Klebsiella pneumoniae (KleDacyl), providing the second experimental 3-D structure of a member of this family of enzymes. The structural model shows a highly dynamic character of this amidohydrolase superfamily member, supplying a snapshot of an open conformation of the enzyme most likely preceding substrate entrance into the catalytic cleft. Our results confirm for the first time the importance of an α/β mobile domain in the substrate specificity of D-acylases (region 282-341 in KleDacyl), opening up new strategies for structural-based protein engineering strategies.

Indexed as

AmidohydrolasesAmino AcidsKlebsiella pneumoniaeAmino Acid IsomerasesKineticsMethionineRecombinant ProteinsSubstrate SpecificityamidaseAmidohydrolasesAmino Acid IsomerasesAmino AcidsMethionineRecombinant Proteinsacylaseamidohydrolaseamidohydrolase processamino acidenzyme cascadeN‐acyl‐amino acidN‐acyl‐D‐amino acid deacylaseN‐succinyl‐amino acid racemaseracemase

Identifiers

PMID40491232
PMCPMC12149444

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.