Evidence map›Paper›PMID 40490510›Full record

ArticleNature genetics2025

Chromothripsis-associated chromosome 21 amplification orchestrates transformation to blast-phase MPN through targetable overexpression of DYRK1A.

Charlotte K Brierley, Bon Ham Yip, Giulia Orlando, Jeremy Wen, Sean Wen, Harsh Goyal, Max Levine, G Maria Jakobsdottir, Avraam Tapinos, Alex J Cornish and 31 more

Abstract read
In one paragraph

Article in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Expression of EndonucleaseCurrent issues in molecular biology · 2026
    Article
  5. Article
  6. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

41 authors.

Charlotte K Brierley *Medical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK. charlotte.brierley@imm.ox.ac.uk.ORCID http://orcid.org/0000-0002-4028-3733
Bon Ham Yip *Division of Experimental Haematology, St Jude Children's Research Hospital, Memphis, TN, USA.
Giulia Orlando *Medical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.
Jeremy WenDivision of Experimental Haematology, St Jude Children's Research Hospital, Memphis, TN, USA.
Sean WenMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.
Harsh GoyalLudwig Institute for Cancer Research Brussels, Brussels, Belgium.
Max LevineIsabl Inc., New York, NY, USA.ORCID http://orcid.org/0000-0001-5156-9086
G Maria JakobsdottirDivision of Cancer Sciences, University of Manchester, Manchester Academic Health Science Centre, Manchester, UK.ORCID http://orcid.org/0000-0001-8225-6541
Avraam TapinosDivision of Cancer Sciences, University of Manchester, Manchester Academic Health Science Centre, Manchester, UK.
Alex J CornishDivision of Genetics and Epidemiology, Institute of Cancer Research, London, UK.ORCID http://orcid.org/0000-0002-3966-3501
Antonio Rodriguez-RomeraMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-7193-9144
Alba Rodriguez-MeiraMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.
Matthew BashtonThe Hub for Biotechnology in the Built Environment, Department of Applied Sciences, Faculty of Health and Life Sciences, Northumbria University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-6847-1525
Angela HamblinDepartment of Haematology, OUH NHS Foundation Trust, Oxford, UK.
Sally Ann ClarkMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-1720-7975
Joseph C HamleyMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.
Olivia FoxOxford Regional Genetics Laboratories, Oxford University Hospitals NHS Foundation Trust, Oxford, UK.
Madalina GiurgiuDepartment of Pediatric Oncology/Hematology, Charité-Universitätsmedizin Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0001-5007-7442
Jennifer O'SullivanMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.
Lauren MurphyMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.
Assunta AdamoMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.
Aude Anais OlijnikMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-0980-6663
Anitria CottonDivision of Experimental Haematology, St Jude Children's Research Hospital, Memphis, TN, USA.
Emily HendrixCenter for Advanced Genome Engineering, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0009-0006-0514-3918
Shilpa NarinaCenter for Advanced Genome Engineering, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-9952-1302
Shondra M Pruett-MillerCenter for Advanced Genome Engineering, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-3793-585X
Amir EnshaeiWolfson Childhood Cancer Research Centre, Newcastle University, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-7464-0743
Claire HarrisonDepartment of Haematology, Guys and St Thomas' NHS Foundation Trust, London, UK.ORCID http://orcid.org/0000-0002-3212-920X
Mark DrummondDepartment of Haematology, Beatson West of Scotland Cancer Centre, Glasgow, UK.
Steven KnapperDivision of Cancer & Genetics, School of Medicine, Cardiff University, Cardiff, UK.
Ayalew TefferiDivision of Hematology, Mayo Clinic, Rochester, MN, USA.
Iléana Antony-DebréINSERM, UMR 1287, Villejuif, France.ORCID http://orcid.org/0000-0002-1911-146X
James DaviesMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-4108-4357
Anton G HenssenDepartment of Pediatric Oncology/Hematology, Charité-Universitätsmedizin Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0003-1534-778X
Supat ThongjueaMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.
David C WedgeDivision of Cancer Sciences, University of Manchester, Manchester Academic Health Science Centre, Manchester, UK.ORCID http://orcid.org/0000-0002-7572-3196
Stefan N ConstantinescuLudwig Institute for Cancer Research Brussels, Brussels, Belgium.
Elli PapaemmanuilComputational Oncology Service, Department of Epidemiology & Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0003-1709-8983
Bethan PsailaMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0001-8198-9663
John D CrispinoDivision of Experimental Haematology, St Jude Children's Research Hospital, Memphis, TN, USA. john.crispino@stjude.org.ORCID http://orcid.org/0000-0002-8182-8306
Adam J MeadMedical Research Council (MRC) Weatherall Institute of Molecular Medicine (WIMM) and NIHR Biomedical Research Centre, University of Oxford, Oxford, UK. adam.mead@imm.ox.ac.uk.ORCID http://orcid.org/0000-0001-8522-1002

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Tissue BankP01CA108671 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Ronald Hoffman · 2006 to 2026
$82.0M
Identifying the mechanisms of leukemia progressionR35CA253096 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI John D Crispino · 2021 to 2026
$6.1M
Cancer Research UK (CRUK) C42639/A26988Cancer Research UK (CRUK) C67633/A29034NCI NIH HHS P01 CA108671NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA021765NCI NIH HHS R35 CA253096Wellcome TrustWellcome Trust (Wellcome) 220586/Z/20/Z
6 · The paper itself

Abstract

Chromothripsis, the chaotic shattering and repair of chromosomes, is common in cancer. Whether chromothripsis generates actionable therapeutic targets remains an open question. In a cohort of 64 patients in blast phase of a myeloproliferative neoplasm (BP-MPN), we describe recurrent amplification of a region of chromosome 21q ('chr. 21amp') in 25%, driven by chromothripsis in a third of these cases. We report that chr. 21amp BP-MPN has a particularly aggressive and treatment-resistant phenotype. DYRK1A, a serine threonine kinase, is the only gene in the 2.7-megabase minimally amplified region that showed both increased expression and chromatin accessibility compared with non-chr. 21amp BP-MPN controls. DYRK1A is a central node at the nexus of multiple cellular functions critical for BP-MPN development and is essential for BP-MPN cell proliferation in vitro and in vivo, and represents a druggable axis. Collectively, these findings define chr. 21amp as a prognostic biomarker in BP-MPN, and link chromothripsis to a therapeutic target.

Indexed as

Blast CrisisCell Transformation, NeoplasticChromosomes, Human, Pair 21ChromothripsisMyeloproliferative DisordersProtein Serine-Threonine KinasesProtein-Tyrosine KinasesAnimalsCell ProliferationDyrk KinasesFemaleGene AmplificationHumansMaleMiceMiddle AgedDyrk KinasesProtein Serine-Threonine KinasesProtein-Tyrosine Kinases

Identifiers

PMID40490510
PMCPMC12165854

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.