Evidence map›Paper›PMID 40490493›Full record

ArticleExperimental & molecular medicine2025

Temporal single-cell sequencing analysis reveals that GPNMB-expressing macrophages potentiate muscle regeneration.

Yu-Fan Chen, Chien-Wei Lee, Yi-Shuan J Li, Wei-Ting Lin, Hsiao-Yun Chen, Yu-Chuan Chen, Chia-Hao Lin, Jennifer Hui-Chun Ho, Li-Fan Lu, Shu Chien and 1 more

Abstract read
In one paragraph

Article in Experimental & molecular medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Yu-Fan ChenBiomedical Technology and Device Research Laboratories, Industrial Technology Research Institute, Hsinchu, Taiwan. yufan0521@gmail.com.ORCID http://orcid.org/0000-0002-1661-298X
Chien-Wei LeeTranslational Cell Therapy Center, China Medical University Hospital, Taichung, Taiwan.
Yi-Shuan J LiInstitute of Engineering in Medicine, University of California San Diego, La Jolla, CA, USA.
Wei-Ting LinYang Ming Regenerative Therapeutics Co., Ltd., Taichung, Taiwan.
Hsiao-Yun ChenTranslational Cell Therapy Center, China Medical University Hospital, Taichung, Taiwan.
Yu-Chuan ChenDoctoral Degree Program of Translational Medicine, National Yang Ming Chiao Tung University and Academia Sinica, Taipei, Taiwan.
Chia-Hao LinSchool of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
Jennifer Hui-Chun HoDepartment of Medical Research, Eye Center, China Medical University Hospital, China Medical University, Taichung, Taiwan.
Li-Fan LuSchool of Biological Sciences, University of California San Diego, La Jolla, CA, USA.
Shu ChienInstitute of Engineering in Medicine, University of California San Diego, La Jolla, CA, USA. shuchien@ucsd.edu.
Oscar Kuang-Sheng LeeDepartment of Biotechnology Medicine, MacKay Memorial Hospital, Taipei, Taiwan. oscarlee9203@gmail.com.

Funding

Systems Biology Analyses for Hemodynamic Regulation of Vascular HomeostasisR01HL108735 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, SHYY, JOHN YJ · 2012 to 2024
$13.4M
Shear Regulation of MicroRNA Transportomes and Targetomes in Vascular HomeostasisR01HL106579 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, SHYY, JOHN YJ · 2011 to 2022
$8.3M
Role of Spatiotemporal Epigenetic Dynamics in Regulating Endothelial Gene Expressions under FlowsR01HL121365 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHIEN, SHU, WANG, YINGXIAO · 2014 to 2025
$7.5M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
NHLBI NIH HHS R01 HL106579NHLBI NIH HHS R01 HL108735NHLBI NIH HHS R01 HL121365NIH HHS S10 OD026929
6 · The paper itself

Abstract

Macrophages play a crucial role in coordinating the skeletal muscle repair response, but their phenotypic diversity and the transition of specialized subsets to resolution-phase macrophages remain poorly understood. Here, to address this issue, we induced injury and performed single-cell RNA sequencing on individual cells in skeletal muscle at different time points. Our analysis revealed a distinct macrophage subset that expressed high levels of Gpnmb and that coexpressed critical factors involved in macrophage-mediated muscle regeneration, including Igf1, Mertk and Nr1h3. Gpnmb gene knockout inhibited macrophage-mediated efferocytosis and impaired skeletal muscle regeneration. Functional studies demonstrated that GPNMB acts directly on muscle cells in vitro and improves muscle regeneration in vivo. These findings provide a comprehensive transcriptomic atlas of macrophages during muscle injury, highlighting the key role of the GPNMB macrophage subset in regenerative processes. Our findings suggest that modulating GPNMB signaling in macrophages may represent a promising avenue for future research into therapeutic strategies for enhancing skeletal muscle regeneration.

Indexed as

MacrophagesMembrane GlycoproteinsMuscle, SkeletalRegenerationSingle-Cell AnalysisAnimalsEye ProteinsMiceMice, Inbred C57BLMice, KnockoutTranscriptomeEye ProteinsGpnmb protein, mouseMembrane Glycoproteins

Identifiers

PMID40490493
PMCPMC12229484

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.