Evidence map›Paper›PMID 40490443›Full record

ArticleScientific reports2025

Ancient DNA integrates fossil and modern giant salamander taxonomy.

Masahiro Noda, Takushi Kishida, Hiroyuki Kitagawa, Ibuki Fukuyama, Kanto Nishikawa

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Masahiro NodaGraduate School of Human and Environmental Studies, Kyoto University, Yoshida Nihonmatsu, Sakyo, 606-8501, Kyoto, Japan. noda.masahiro.48u@st.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0002-2220-7892
Takushi KishidaCollege of Bioresource Sciences, Nihon University, Fujisawa, 252-0880, Japan.
Hiroyuki KitagawaInstitute for Space-Earth Environmental Research, Nagoya University, Nagoya, 464-8601, Japan.
Ibuki FukuyamaField Science Center for Northern Biosphere, Wakayama Experimental Forest, Hokkaido University, Kozagawa, Wakayama, 649-4563, Higashimuro, Japan.ORCID http://orcid.org/0000-0001-6887-9582
Kanto NishikawaGraduate School of Human and Environmental Studies, Kyoto University, Yoshida Nihonmatsu, Sakyo, 606-8501, Kyoto, Japan.ORCID http://orcid.org/0000-0002-6274-4959

Funding

Japan Society for the Promotion of Science 23K23956JST SPRING JPMJSP2110the Environment Research and Technology Development Fund of the Environmental Restoration and Conservation Agency of Japan JPMEERF20204002
6 · The paper itself

Abstract

The genus Andrias includes the largest extant salamanders, and is comprised of one Japanese species A. japonicus and four Chinese species. The fossil record of the giant salamander is incomplete and modern giant salamanders are not differentiated osteologically among species, making it difficult to identify bones at the species level. In this study, we re-examined a fossil series of giant salamander discovered from a cave on Shikoku Island, Japan. We obtained ancient DNA from the fossil and confirmed that the partial sequence of mitochondrial DNA was identical to that of extant A. japonicus. These remains were dated to the Late Pleistocene, however, the result of carbon-14 dating in this study estimated the age as more recent, approximately 3,500-4,100 years ago. Currently, there is a small population of A. japonicus in Shikoku, but it is far removed from the fossil discovery area. Our findings suggest that wild A. japonicus in western Shikoku may have been extirpated very recently.

Indexed as

CaudataDNA, AncientDNA, MitochondrialFossilsAnimalsJapanPhylogenyDNA, AncientDNA, Mitochondrial

Identifiers

PMID40490443
PMCPMC12149308

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.