Evidence map›Paper›PMID 40489613›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Solution mapping of MHC-I:TCR interactions using a minimalistic protein system.

Claire H Woodward, Apala Chaudhuri, Xiaojing Tina Chen, William L White, K Christopher Garcia, David Baker, Nikolaos G Sgourakis

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Design of solubly expressed miniaturized SMART MHCs.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Claire H Woodward *Department of Biochemistry and Biophysics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-0373-6318
Apala Chaudhuri *Department of Biochemistry and Biophysics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0003-2669-850X
Xiaojing Tina ChenDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.
William L WhiteDepartment of Biochemistry, University of Washington, Seattle, WA 98195.ORCID 0009-0004-0041-2125
K Christopher GarciaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, CA 94305.ORCID 0000-0001-9273-0278
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA 98195.ORCID 0000-0001-7896-6217
Nikolaos G SgourakisDepartment of Biochemistry and Biophysics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0003-3655-3902

Funding

Human Pancreas Analysis Program for Type 1 Diabetes - HPAP-T1DU01DK112217 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MARK A. ATKINSON, KLAUS H KAESTNER · 2021 to 2026
$46.8M
Structural correlates of T cell receptor signalingR01AI103867 · NIAID · STANFORD UNIVERSITY · PI Kenan Christopher GARCIA · 2014 to 2026
$5.3M
An integrative structural biology approach to understanding metabolite recognition by cellular receptorsR35GM125034 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SGOURAKIS, NIKOLAOS · 2017 to 2025
$4.7M
Molecular mechanism of antigen editing by Class-I MHC ChaperonesR01AI143997 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SGOURAKIS, NIKOLAOS · 2019 to 2023
$4.0M
Structural biology and molecular biophysics training programT32GM132039 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Ben E. Black, Elizabeth Rhoades · 2019 to 2026
$3.3M
NextGen - CHOPOT2CA278687 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI JOHN M MARIS · 2022 to 2026
$2.7M
MATCHMAKERSOT2CA297288 · NCI · UNIVERSITY OF WASHINGTON · PI DAVID BAKER · 2024 to 2026
$1.2M
MATCHMAKERS: SOLVING TCR RECOGNITION AND DESIGN VIA INTEGRATED HIGH-THROUGHPUT SCREENING, STRUCTURAL, FUNCTIONAL, AND COMPUTATIONAL APPROACHESOT2CA297242 · NCI · STANFORD UNIVERSITY · PI Kenan Christopher GARCIA · 2024 to 2026
$1.1M
MATCHMAKERS - Solving TCR recognition and design via integrated high-throughput screening, structural, functional, and computational approachesOT2CA297575 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI Nikolaos Sgourakis · 2024 to 2026
$1.0M
Cancer Research UK (CRUK) CGCATF-2021/100002HHS | NIH | National Cancer Institute (NCI) CA278687-01HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM125034HHS | NIH | NIAID | Division of Intramural Research (DIR, NIAID) 5R01AI143997NCI NIH HHS OT2 CA278687NCI NIH HHS OT2 CA297242NCI NIH HHS OT2 CA297288NCI NIH HHS OT2 CA297575NIAID NIH HHS R01 AI103867NIAID NIH HHS R01 AI143997NIDDK NIH HHS U01 DK112217NIGMS NIH HHS R35 GM125034NIGMS NIH HHS T32 GM132039
6 · The paper itself

Abstract

Recognition of epitopic peptide antigens presented on class I major histocompatibility complex (MHC-I) proteins by T cell receptors (TCRs) forms the cornerstone of immune surveillance, leading to a plethora of adaptive immune responses. Characterization of TCR:peptide/MHC-I interactions is critical for understanding immune recognition, and developing immunotherapies, but the large variation in docking orientations of TCRs on their peptide/MHC-I targets challenges structural modeling. NMR spectroscopy could potentially resolve this ambiguity, but the large size of the TCR:peptide/MHC-I complex limits data quality. Here, we demonstrate that a designed MHC-I protein, SMART A*02:01, enables facile solution mapping of MHC-I:TCR interactions at scale. Our approach can be combined with computational modeling and structure-guided engineering to aid the development of TCR-based therapeutics.

Indexed as

Histocompatibility Antigens Class IHLA-A2 AntigenReceptors, Antigen, T-CellHumansModels, MolecularPeptidesProtein BindingHistocompatibility Antigens Class IHLA-A2 AntigenPeptidesReceptors, Antigen, T-Cellcomputational protein designHLAhuman leukocyte antigenpeptide antigenT cell receptor

Identifiers

PMID40489613
PMCPMC12184636

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.