Evidence map›Paper›PMID 40488763›Full record

ArticlePlanta2025

Regulation of HvASN1 expression by bZIP transcription factors during barley embryo development and germination.

Estefanía Contreras, Rosario Alonso, Elena Pastor-Mora, Mar G Ceballos, Jesús Vicente-Carbajosa, Raquel Iglesias-Fernández

Abstract read
In one paragraph

Article in Planta, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Estefanía ContrerasCentro de Biotecnología y Genómica de Plantas-Severo Ochoa (CBGP, UPM-INIA), Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (CSIC/INIA), 28223, Pozuelo de Alarcón, Spain.ORCID http://orcid.org/0000-0002-1822-6839
Rosario AlonsoDepartamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, UPM, 28040, Madrid, Spain.
Elena Pastor-MoraCentro de Biotecnología y Genómica de Plantas-Severo Ochoa (CBGP, UPM-INIA), Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (CSIC/INIA), 28223, Pozuelo de Alarcón, Spain.
Mar G CeballosCentro de Biotecnología y Genómica de Plantas-Severo Ochoa (CBGP, UPM-INIA), Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (CSIC/INIA), 28223, Pozuelo de Alarcón, Spain.
Jesús Vicente-CarbajosaCentro de Biotecnología y Genómica de Plantas-Severo Ochoa (CBGP, UPM-INIA), Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (CSIC/INIA), 28223, Pozuelo de Alarcón, Spain. jesus.vicente@upm.es.ORCID https://orcid.org/0000-0002-6332-1712
Raquel Iglesias-FernándezCentro de Biotecnología y Genómica de Plantas-Severo Ochoa (CBGP, UPM-INIA), Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (CSIC/INIA), 28223, Pozuelo de Alarcón, Spain. raquel.iglesias@upm.es.ORCID http://orcid.org/0000-0003-4773-7176

Funding

Ministerio de Ciencia, Innovación y Universidades BIO2017-82873-RMinisterio de Ciencia, Innovación y Universidades PID2023-148279OB-I00Ministerio de Ciencia, Innovación y Universidades PRIMA-AEIMinisterio de Ciencia, Innovación y Universidades ref: PCI2022-132988
6 · The paper itself

Abstract

MAIN

conclusionOur findings provide new insights into the molecular mechanisms that regulate N metabolism in barley and potentially other cereal crops, offering valuable perspectives for enhancing N use efficiency in agricultural practices. Efficient nitrogen (N) utilization is essential for plant growth, especially during seed development and germination. In barley (Hordeum vulgare), the asparagine synthetase gene HvASN1 is essential for nitrogen transport and storage, synthesizing asparagine, a key molecule in N recycling. The phylogenetic analysis indicates that HvASN1 clusters with Arabidopsis AtASN1 and shares high similarity with HvASN2, suggesting a conserved role in N metabolism. A detailed characterization of a ~ 500 bp HvASN1 promoter region revealed a conserved GCN-like cis-element. Transient expression assays in Nicotiana benthamiana demonstrated that the wild-type promoter significantly increases luciferase activity under dark conditions, whereas mutation of the GCN-like element reduces this activity, highlighting its role in light-responsive gene regulation. Further investigation identified the bZIP transcription factor HvbZIP53 as an activator of the HvASN1 promoter through binding to the GCN-like element. This activation is finely tuned by sucrose via a conserved upstream open reading frame (uORF) in HvbZIP53's 5' UTR, which mediates sucrose-induced repression of translation. Additionally, yeast two-hybrid assays and transient expression studies in Arabidopsis provided evidence that HvbZIP53 physically interacts with HvBLZ1, a C group bZIP factor, resulting in a synergistic enhancement of HvASN1 expression. The spatial and temporal expression analyses further revealed that HvASN1, HvbZIP53, and HvBLZ1 are co-expressed in key seed tissues during development and germination. These findings indicate a complex regulatory network integrating environmental and metabolic signals to modulate N metabolism in barley, with implications for improving N use efficiency in cereal crops.

Indexed as

Aspartate-Ammonia LigaseBasic-Leucine Zipper Transcription FactorsGene Expression Regulation, PlantGerminationHordeumPlant ProteinsSeedsNitrogenPhylogenyPromoter Regions, GeneticAspartate-Ammonia LigaseBasic-Leucine Zipper Transcription FactorsNitrogenPlant ProteinsAsparagine synthetase 1GerminationHordeum vulgareHvBLZ1HvbZIP53Light regulationNitrogen assimilationNitrogen use efficiencySeed development

Identifiers

PMID40488763
PMCPMC12148973

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.