Evidence map›Paper›PMID 40488747›Full record

ArticleMicrobial genomics2025

Utilizing large and diverse bacterial genome datasets to improve the detection and identification of

Femke M Ahlers, David J Litt, Melissa J Jansen van Rensburg, James E Bray, Keith A Jolley, Carmen Sheppard, Seyi Eletu, Juliana Coelho, Bruno Pichon, Odile B Harrison and 4 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbial genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Digital PCR linkage analysis resolvesMicrobiology spectrum · 2026
    Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Femke M AhlersNuffield Department of Population Health, University of Oxford, Oxford, UK.
David J LittRespiratory and Vaccine Preventable Bacteria Reference Unit, UK Health Security Agency, London, UK.
Melissa J Jansen van RensburgNuffield Department of Population Health, University of Oxford, Oxford, UK.
James E BrayDepartment of Biology, University of Oxford, Oxford, UK.
Keith A JolleyDepartment of Biology, University of Oxford, Oxford, UK.
Carmen SheppardRespiratory and Vaccine Preventable Bacteria Reference Unit, UK Health Security Agency, London, UK.
Seyi EletuRespiratory and Vaccine Preventable Bacteria Reference Unit, UK Health Security Agency, London, UK.
Juliana CoelhoAntimicrobial Resistance and Healthcare Associated Infection Reference Unit, UK Health Security Agency, London, UK.
Bruno PichonHealthcare Associated Infections, Fungal, AMR, AMU & Sepsis Division, UK Health Security Agency, London, UK.
Odile B HarrisonDepartment of Biology, University of Oxford, Oxford, UK.
Martin C J MaidenDepartment of Biology, University of Oxford, Oxford, UK.
David W EyreNuffield Department of Population Health, University of Oxford, Oxford, UK.
Norman K FryRespiratory and Vaccine Preventable Bacteria Reference Unit, UK Health Security Agency, London, UK.
Angela B BrueggemannNuffield Department of Population Health, University of Oxford, Oxford, UK.

Funding

Wellcome Trust 218205
6 · The paper itself

Abstract

The accurate identification of

Indexed as

Genome, BacterialPneumococcal InfectionsPolymerase Chain ReactionStreptococcus pneumoniaeComputer SimulationHumansSensitivity and Specificitymolecular diagnosticsnon-pneumococcal Streptococcus speciesqPCRrapid diagnostic testsStreptococcus pneumoniaeXisco

Identifiers

PMID40488747
PMCPMC12149409

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.