Evidence map›Paper›PMID 40488491›Full record

ArticlemSystems2025

Hyperdiverse, bioactive, and interaction-specific metabolites produced only in co-culture suggest diverse competitors may fuel secondary metabolism of xylarialean fungi.

Mario E E Franco, Megan N Nickerson, Benjamin P Bowen, Katherine Louie, Trent R Northen, Jana M U'Ren

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Article in mSystems, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. High bacterial diversity drives the suppression of a soilborne plant disease.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mario E E FrancoBIO5 Institute, University of Arizona, Tucson, Arizona, USA.
Megan N NickersonBIO5 Institute, University of Arizona, Tucson, Arizona, USA.
Benjamin P BowenU.S. Department of Energy, The Joint Genome Institute, Berkeley National Labs, Berkeley, California, USA.
Katherine LouieU.S. Department of Energy, The Joint Genome Institute, Berkeley National Labs, Berkeley, California, USA.
Trent R NorthenU.S. Department of Energy, The Joint Genome Institute, Berkeley National Labs, Berkeley, California, USA.
Jana M U'RenBIO5 Institute, University of Arizona, Tucson, Arizona, USA.ORCID 0000-0001-7608-5029

Funding

U.S. Department of Energy CSP Grant # 503506,https://doi.org/10.46936/10.25585/60001144
6 · The paper itself

Abstract

Xylariales is one of the largest and most ecologically diverse fungal orders that is well-known for its chemical diversity. Enhanced secondary metabolism of Xylariales taxa is associated with increased gene duplication and horizontal gene transfer (HGT) of biosynthetic gene clusters (BGCs), especially in generalist taxa with both greater saprotrophic abilities and broader host ranges as foliar endophytic symbionts. Thus, one hypothesis for BGC diversification among more generalist fungi is that diverse competitive interactions-in both their free-living and symbiotic life stages with many hosts-may exert selective pressure for HGT and a diverse metabolic repertoire. Here, we used untargeted metabolomics to examine how competition (pairwise co-cultures) between seven xylarialean fungi influenced their metabolite production. Of the >9,000 total features detected, 6,115 and 2,071 were over-represented in co-cultures vs monocultures, respectively. For each strain, each additional co-culture interaction resulted in an 11- to 14-fold increase in metabolite richness compared to monocultures, reflecting the limited amount of metabolite overlap among different co-culture combinations. Phylogenetic relatedness and BGC content did not impact the diversity of metabolites produced in co-culture; however, co-cultures between more ecologically distinct fungi elicited the strongest metabolic response. Overall, the diversity, specificity, and putative bioactivity of metabolites over-represented in co-culture support the role of widespread and diverse competitive fungal interactions to drive xylarialean metabolic diversification. Additionally, as fungal-produced plant hormones were only detected in co-culture, our results reveal the potential for

Indexed as

Secondary MetabolismXylarialesCoculture TechniquesGene Transfer, HorizontalMetabolomeMetabolomicsMultigene FamilyPhylogenybiosynthetic gene clustersfungal endophytesmicrobial interactionsmycologysecondary metabolismuntargeted metabolomics

Identifiers

PMID40488491
PMCPMC12282070

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.