ArticleACS omega2025
DDtrek: A PyMOL-Based Management System for 3D Structural Data Series.
Article in ACS omega, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
3 citing papers in PubMed.
- Identification and Validation of Key Genes Related to Arginine Methylation Modification in Sepsis Using Transcriptome Combined with Mendelian Randomization Analysis.Shock (Augusta, Ga.) · 2026Article
- Computational Prediction of Deleterious SNPs in the GALNS Gene Implicated in Morquio A Syndrome (MPS IVA).ACS omega · 2026Article
- VEZT promotes pancreatic cancer progression by stabilizing SLC25A24 and preserving mitochondrial function.Frontiers in immunology · 2026Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In multiple areas of molecular biology research, series of closely related atomic structures of biomacromolecules are routinely generated. In particular, rational structure-based drug design heavily relies on the structural analysis of experimentally determined complexes between the target protein and multiple designed ligands (small molecules or biologicals). Here, we introduce DDtrek, a system for alignment, evaluation, and presentation of such structural data. This system is implemented as a plugin for the highly popular molecular graphics software PyMOL. A special feature of DDtrek is visualization of the aligned ligand structures together with the corresponding experimental density maps obtained through X-ray crystallography or cryoelectron microscopy, providing for the assessment of atomic model reliability and partial disorder. DDtrek is a lightweight and user-friendly system that can be utilized by whole research teams. DDtrek is freely available for Windows, MacOS, and Linux from https://github.com/BiocrystLab/DDtrek.
Identifiers
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.