Evidence map›Paper›PMID 40487198›Full record

ArticleComputational and structural biotechnology journal2025

m5CStack: An integrated framework for m5C site prediction using multi-feature stacking.

Xuxin He, Jiahui Guan, Peilin Xie, Zhihao Zhao, Qianchen Liu, Lantian Yao, Ying-Chih Chiang

Abstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xuxin HeKobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, 2001 Longxiang Road, 518172, Shenzhen, China.
Jiahui GuanKobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, 2001 Longxiang Road, 518172, Shenzhen, China.
Peilin XieKobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, 2001 Longxiang Road, 518172, Shenzhen, China.
Zhihao ZhaoKobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, 2001 Longxiang Road, 518172, Shenzhen, China.
Qianchen LiuSchool of Medicine, The Chinese University of Hong Kong, Shenzhen, 2001 Longxiang Road, 518172, Shenzhen, China.
Lantian YaoKobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, 2001 Longxiang Road, 518172, Shenzhen, China.
Ying-Chih ChiangKobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, Shenzhen, 2001 Longxiang Road, 518172, Shenzhen, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA 5-methylcytosine (m5C) modification sites are essential for understanding the regulation of RNA functions in various biological processes. However, the vast amount of sequence data generated by modern genomics poses significant challenges for traditional identification methods, which often struggle to meet high-throughput demands. Consequently, computational tools have become indispensable for predicting m5C sites. In this study, we present m5CStack, an advanced ensemble learning framework designed to predict m5C modification sites with high accuracy. m5CStack integrates multiple feature encoding techniques and machine learning models through a stacking architecture to enhance the robustness and reliability of predictions. We evaluate the framework on RNA datasets derived from multiple species, including

Indexed as

5-methylcytosineEnsemble learningMachine learningRNA modificationStacking architecture

Identifiers

PMID40487198
PMCPMC12145772

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.