Evidence map›Paper›PMID 40483543›Full record

ArticleMolecular plant pathology2025

A Lrp/AsnC Family Transcriptional Regulator Lrp Is Essential for the Pathogenicity of Dickeya oryzae.

Xiaoyan Wu, Qunyi Chen, Huidi Liu, Weihan Gu, Yizhen Deng, Lian-Hui Zhang, Zhibin Liang

Abstract read
In one paragraph

Article in Molecular plant pathology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaoyan WuGuangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.
Qunyi ChenGuangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.
Huidi LiuGuangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.
Weihan GuGuangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.
Yizhen DengGuangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.ORCID 0000-0002-3572-1559
Lian-Hui ZhangGuangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.
Zhibin LiangGuangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China.ORCID 0000-0003-3433-0975

Funding

Guangdong Forestry Science and Technology Innovation Program 2020KJCX009National Natural Science Foundation of China U22A20480
6 · The paper itself

Abstract

Dickeya oryzae causes severe soft rot diseases in a range of important crops. To understand its complicated pathogenic mechanisms, we tried to identify the key virulence regulators through transposon mutagenesis. This led to the identification of a member of the Lrp/AsnC family transcriptional regulators in D. oryzae EC1, designated as Lrp. Phenotype analyses showed that Lrp positively regulated biofilm formation and the production of zeamines, proteases and polygalacturonases, but negatively regulated bacterial swimming motility. Deletion of lrp caused a drastic attenuation in bacterial virulence, indicating that Lrp is a key regulator in the modulation of D. oryzae pathogenicity. We further showed that the transcription of the lrp gene was negatively regulated by the transcriptional regulators SlyA, Fis and OhrR, and the transcriptional expression of tzpA, ohrR and fis was positively modulated by Lrp. Moreover, we demonstrated that Lrp can directly bind to the promoter regions of zmsA, zmsK, prtG, prtX, pehK, pehX, fis, tzpA and ohrR. DNase I footprinting assay determined that Lrp was capable of binding to a specific site (5'-GTGTAATTATGGGCGTGCTCCGGG-3') in the promoter of zmsA. Furthermore, we found that four amino acid residues of Lrp, L20, L23, G111 and T146, are essential to the biological function of Lrp. Overall, this study demonstrated that Lrp is an essential virulence modulator in D. oryzae and suggested that Lrp can be a potent target for controlling the soft rot diseases caused by D. oryzae.

Indexed as

Bacterial ProteinsDickeyaTranscription FactorsBiofilmsGene Expression Regulation, BacterialOryzaPlant DiseasesPromoter Regions, GeneticVirulenceBacterial ProteinsTranscription Factorscell wall‐degrading enzymesDickeya oryzaeLrp/AsnC familypathogenicityzeamines

Identifiers

PMID40483543
PMCPMC12145271

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.