Evidence map›Paper›PMID 40481250›Full record

ArticleScientific reports2025

Investigation of genomic island 2 deciphers the evolution of a genus Brucella.

Menachem Banai

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Menachem BanaiDepartment of Bacteriology, Kimron Veterinary Institute, Bet Dagan, Israel. menachemba48@gmail.com.

Funding

the Technical Support Working Group project #T-582 (2005 - 2009) #T-582
6 · The paper itself

Abstract

HGT acquisition of genomic island 2 (GI-2) into the Brucella genome endowed these organisms with two transglycosylases which function in the final steps of the O-polysaccharide (OPS) polymerization. Here, the investigation of the brucellaphage Pr genome revealed sequence similarities to GI-2 in two DNA regions, the Chelativorans sp. BNC1 and the Ochrobactrum anthropi ATCC 49188 DNAs, respectively. This led the investigation of the published GI-2 elements, using the phage attB and attP sequences as hallmarks of the integration site. The study identified a Mesorhizobium loti integrative, conjugative element (ICE) into which GI-2 integrated. A similar ICE, which nevertheless lacks GI-2, and shows characteristic chromosomal architectural differences between the taxa, was found in the genomes of the Ochrobactrum sister clade and the alphaproteobacterial Chelativorans sp. BNC1 strains. This proves that Brucella and Ochrobactrum diverged at the genus level while being in the state of a monopartite genome bearing organism.

Indexed as

BrucellaEvolution, MolecularGenomic IslandsBacteriophagesGenome, BacterialOchrobactrumPhylogenyBrucellaChromosomeGenusIntegrative conjugative elementOchrobactrumtRNA

Identifiers

PMID40481250
PMCPMC12144129

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.