Evidence map›Paper›PMID 40481055›Full record

ArticleScientific data2025

Haplotype-resolved telomere-to-telomere genome assembly of the dikaryotic fungus pathogen Rhizoctonia cerealis.

Jiang-Na Han, Yu Li, Wei Li, Hao-Hao Yan, Fengping Yuan, Huai-Gu Chen, De-Jun Han, Zhen-Sheng Kang, Qing-Dong Zeng

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Telomere-to-Telomere Genome Assemblies ofJournal of fungi (Basel, Switzerland) · 2026
    Article
  3. Telomere-to-Telomere Genome Assembly ofJournal of fungi (Basel, Switzerland) · 2026
    Article
  4. Identification and genome insights intoFrontiers in plant science · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jiang-Na Han *State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Yu Li *State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Wei Li *Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, 210014, China.
Hao-Hao Yan *State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Fengping YuanState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Huai-Gu ChenInstitute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, 210014, China.
De-Jun HanState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China. handj@nwafu.edu.cn.
Zhen-Sheng KangState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China. kangzs@nwsuaf.edu.cn.
Qing-Dong ZengState Key Laboratory for Crop Stress Resistance and High-Efficiency Production, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China. zengqd@nwafu.edu.cn.ORCID 0000-0002-7856-2340

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhizoctonia cerealis, the causal agent of sharp eyespot, is a highly destructive pathogen of wheat. Despite its global importance, the genetic and molecular mechanisms underlying virulence of R. cerealis remain poorly understood. R. cerealis is a dikaryotic organism and the haplotype phase has been isolated. Based on the PacBio HiFi, Oxford Nanopore, and Hi-C platforms, we assembled the first high quality telomere-to-telomere (T2T) haplotype-resolved genome of R. cerealis, with sizes of 41.50 and 41.05 Mb, and N50 sizes of 2.67 and 2.42 Mb, respectively. High consensus quality values of 57.75 and 57.09 for the two haplotypes validated the accuracy of the assembly. The assembly achieved R-AQI and S-AQI scores of 92.5 and 100, respectively, both indicating reference-level quality. A total 25,353 protein coding genes were predicted for the two haplotypes with a BUSCO score of 96.7%. The genome assembly will serve as the foundation for further research on allele-specific expression, genetic variation and evolution of R. cerealis.

Indexed as

Genome, FungalRhizoctoniaTelomereHaplotypes

Identifiers

PMID40481055
PMCPMC12144256

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.