Evidence map›Paper›PMID 40479737›Full record

ArticleThe Journal of organic chemistry2025

Photoactivation of BODIPY Fluorescence with Green Light.

Andrea Tomassini, Yunshu Liu, Yeting Zheng, Md Abul Shahid, Amrita Singh, Ambarish Kumar Singh, William M Piedra, Xiayi Gong, Colin E Hayter, Keiran I Singh and 4 more

Abstract read
In one paragraph

Article in The Journal of organic chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Andrea TomassiniLaboratory for Molecular Photonics, Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146-0431, United States.ORCID 0000-0002-1386-4866
Yunshu LiuMolecular Analytics and Photonics (MAP) Lab, Department of Textile Engineering, Chemistry and Science, North Carolina State University, Raleigh, North Carolina 27606, United States.
Yeting ZhengLaboratory for Molecular Photonics, Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146-0431, United States.
Md Abul ShahidMolecular Analytics and Photonics (MAP) Lab, Department of Textile Engineering, Chemistry and Science, North Carolina State University, Raleigh, North Carolina 27606, United States.
Amrita SinghLaboratory for Molecular Photonics, Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146-0431, United States.
Ambarish Kumar SinghLaboratory for Molecular Photonics, Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146-0431, United States.
William M PiedraLaboratory for Molecular Photonics, Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146-0431, United States.
Xiayi GongMolecular Analytics and Photonics (MAP) Lab, Department of Textile Engineering, Chemistry and Science, North Carolina State University, Raleigh, North Carolina 27606, United States.
Colin E HayterLaboratory for Molecular Photonics, Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146-0431, United States.
Keiran I SinghLaboratory for Molecular Photonics, Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146-0431, United States.
Burjor CaptainDepartment of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146-0431, United States.ORCID 0000-0002-7272-5655
Salvatore SortinoLaboratory of Photochemistry, Department of Drug and Health Sciences, University of Catania, Viale Andrea Doria 6, I-95125 Catania, Italy.ORCID 0000-0002-2086-1276
Yang ZhangMolecular Analytics and Photonics (MAP) Lab, Department of Textile Engineering, Chemistry and Science, North Carolina State University, Raleigh, North Carolina 27606, United States.ORCID 0000-0003-1011-3001
Françisco M RaymoLaboratory for Molecular Photonics, Department of Chemistry, University of Miami, 1301 Memorial Drive, Coral Gables, Florida 33146-0431, United States.ORCID 0000-0002-6163-6606

Funding

Photoactivatable Fluorophores for High-Throughput Multiplexed Tracking of Single-Molecules in Live CellsR01GM143397 · NIGMS · UNIVERSITY OF MIAMI CORAL GABLES · PI RAYMO, FRANCISCO M · 2022 to 2025
$1.4M
Developing Switchable and Functional Fluorophores For Multi-Functional Super-Resolution MicroscopyR35GM155241 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI Yang Zhang · 2024 to 2026
$1.1M
Bright and switchable fluorophores for highly multiplexed super-resolution microscopy towards molecular interaction imagingR21GM141675 · NIGMS · NORTHWESTERN UNIVERSITY · PI ZHANG, YANG · 2021 to 2022
$400k
NIGMS NIH HHS R01 GM143397NIGMS NIH HHS R21 GM141675NIGMS NIH HHS R35 GM155241
6 · The paper itself

Abstract

Existing synthetic dyes with photoactivatable fluorescence demand ultraviolet radiation or, at best, violet light for fluorescence photoactivation. Illumination of biological samples within this range of relatively short wavelengths, however, causes significant photodamage. Strategies for the photochemical generation of fluorescent products under irradiation at wavelengths longer than 500 nm with moderate power densities are urgently needed to enable live-cell imaging with negligible phototoxicity. We identified a possible structural design to satisfy these stringent irradiation requirements. Specifically, we demonstrated that illumination of a borondipyrromethene (BODIPY) chromophore in the green region of the visible spectrum cleaves an adjacent oxazine heterocycle to form a fluorescent product with an emission in the red spectral window. We successfully photoactivated this compound with a 561 nm laser and localized single molecules of the fluorescent product with nanometer precision under 581 nm excitation, even in the interior of live cells. Indeed, we reconstructed subdiffraction images of the nanostructured lysosomes of the labeled cells under such unprecedented illumination conditions. Our results clearly indicate that this photochemical strategy for fluorescence photoactivation is a viable one for the realization of very-much needed photoactivatable synthetic dyes for super-resolution imaging with live-cell compatible irradiation requirements.

Indexed as

Boron CompoundsFluorescent DyesLightFluorescenceGreen LightHumansMolecular StructurePhotochemical Processes4,4-difluoro-4-bora-3a,4a-diaza-s-indaceneBoron CompoundsFluorescent Dyes

Identifiers

PMID40479737
PMCPMC12318360

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.