Evidence map›Paper›PMID 40479711›Full record

ArticleNucleic acids research2025

Bacterial RecD2 is a processive single-stranded DNA translocase with strand-switching capacity at DNA forks.

Silvia Hormeño, Cristina Ramos, Javier Mendia-Garcia, Clara Aicart-Ramos, Silvia Ayora, Fernando Moreno-Herrero

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. A superfamily 1 helicase translocates on double-stranded DNA.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Silvia HormeñoDepartment of Macromolecular Structures, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, 28049, Madrid, Spain.
Cristina RamosDepartment of Microbial Biotechnology, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, 28049, Madrid, Spain.
Javier Mendia-GarciaDepartment of Macromolecular Structures, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, 28049, Madrid, Spain.
Clara Aicart-RamosDepartment of Macromolecular Structures, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, 28049, Madrid, Spain.
Silvia AyoraDepartment of Microbial Biotechnology, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, 28049, Madrid, Spain.ORCID 0000-0003-3121-1786
Fernando Moreno-HerreroDepartment of Macromolecular Structures, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas, 28049, Madrid, Spain.ORCID 0000-0003-4083-1709

Funding

AEI PID2020-112998GB-I00AEI PID2023-146255NB-I00FEDERMinisterio de Ciencia e Innovacion BES-2017-080504Spanish Ministry of Science, Innovation and UniversitiesSpanish Ministry of Universities FPU21/03892Spanish Ministry of Universities MICIU/AEI/10.13039/501100011033Spanish Ministry of Universities PGC2018-097054-B-I00Spanish Ministry of Universities PID2021-122273NB-I00
6 · The paper itself

Abstract

RecD2 is a superfamily 1B helicase involved in DNA replication and repair, modulating replication restart, fork progression, and RecA recombinase activity. In this work, we have characterized the functions of Bacillus subtilis RecD2 using biochemical and single-molecule approaches. ATPγS binding and low MgCl2 concentrations enhance DNA association, with a preference for forked structures and unstructured DNA longer than 30 nucleotides. RecD2 binds to end-less single-stranded DNA stretched at 8-20 pN and translocates through ATP hydrolysis over long distances (>20 kb) with 5'-3' polarity at high rates. RecD2 shows limited unwinding activity on fork structures, strongly dependent on protein concentration and duplex length, reflecting low processivity. However, processivity improves significantly when force is applied to the translocating strand or unwound DNA ends, enabling the unwinding of thousands of base pairs at rates up to 160 bp/s. Single-molecule assays reveal frequent strand switching on fork substrates, resulting in a non-productive cycle of unwinding and rewinding, likely mediated by the N-terminal domain. This behavior explains the low helicase activity observed in bulk assays. We propose that regulation of strand-switching activity may be relevant for RecD2's in vivo function.

Indexed as

Bacillus subtilisBacterial ProteinsDNA HelicasesDNA, Single-StrandedAdenosine TriphosphateDNA, BacterialDNA ReplicationHydrolysisProtein Bindingadenosine 5'-O-(3-thiotriphosphate)Adenosine TriphosphateBacterial ProteinsDNA, BacterialDNA HelicasesDNA, Single-Stranded

Identifiers

PMID40479711
PMCPMC12143592

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.