Evidence map›Paper›PMID 40479622›Full record

ArticleJCO precision oncology2025

Cross-Comparison Individual Patient-Level Analysis of Three Gene Expression Signatures in Localized Prostate in Over 50,000 Men.

Angela Y Jia, Yilun Sun, Maitry Patel, Atallah Baydoun, Randy A Vince, Jonathan E Shoag, Jason R Brown, Pedro C Barata, Matthew J Schipper, Robert T Dess and 11 more

Abstract readComparative Study
In one paragraph

Article in JCO precision oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Angela Y JiaDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.ORCID 0000-0002-0812-2614
Yilun SunDepartment of Radiation Oncology, University of Michigan, Ann Arbor, MI.ORCID 0000-0002-1341-382X
Maitry PatelDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.
Atallah BaydounDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.ORCID 0000-0003-0244-5583
Randy A VinceDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.ORCID 0000-0002-7779-473X
Jonathan E ShoagDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.ORCID 0000-0002-3119-9986
Jason R BrownDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.ORCID 0000-0001-6225-7555
Pedro C BarataDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.ORCID 0000-0002-8890-2951
Matthew J SchipperDepartment of Radiation Oncology, University of Michigan, Ann Arbor, MI.
Robert T DessDepartment of Radiation Oncology, University of Michigan, Ann Arbor, MI.ORCID 0000-0003-2331-3758
William C JacksonDepartment of Radiation Oncology, University of Michigan, Ann Arbor, MI.ORCID 0000-0001-8709-5978
Soumyajit RoyDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.ORCID 0000-0001-6617-5522
Paul L NguyenBrigham and Women's Hospital/Dana-Farber Cancer Institute, Boston, MA.
Alejandro BerlinDepartment of Radiation Oncology, Princess Margaret Cancer Centre, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-1880-6905
Rohit MehraDepartment of Pathology, University of Michigan, Ann Arbor, MI.ORCID 0000-0002-6955-8884
Edward M SchaefferNorthwestern University, Evanston, IL.
Rojano KashaniDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.
Amar U KishanDepartment of Radiation Oncology, University of California, Los Angeles, Los Angeles, CA.ORCID 0000-0002-7437-6591
Nicholas G ZaorskyDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.ORCID 0000-0002-4932-1986
Todd M MorganDepartment of Urology, University of Michigan, Ann Arbor, MI.ORCID 0000-0002-1140-0603
Daniel E SprattDepartment of Radiation Oncology, University Hospitals Seidman Cancer Center and Case Western Reserve University, Cleveland, OH.ORCID 0000-0002-5973-4741

Funding

Determining the clinical impact of gene expression testing in localized prostate cancerR01CA240991 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORGAN, TODD M., SPRATT, DANIEL EIDELBERG · 2019 to 2024
$3.1M
Quantifying and Personalizing the Clinical Benefit of Metastasis-Directed Therapy in Men with De Novo Oligometastatic Prostate CancerU01CA257638 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI Holly Hartman, Daniel Eidelberg Spratt · 2021 to 2026
$1.8M
Individualized estimates of treatment benefit from hormone therapy for men with prostate cancerR21CA274500 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHIPPER, MATTHEW, SPRATT, DANIEL EIDELBERG · 2023 to 2023
$387k
NCI NIH HHS R01 CA240991NCI NIH HHS R21 CA274500NCI NIH HHS U01 CA257638
6 · The paper itself

Abstract

purposeThe 22-gene Decipher genomic classifier (GC) (22-gene GC) is the only gene expression test with National Comprehensive Cancer Network (NCCN) level 1 evidence for localized prostate cancer (PCa) treatment decision making. It is unclear whether other commercial signatures-Genomic Prostate Score (GPS) or Prolaris (cell cycle progression [CCP])-correlate sufficiently to explain differences in evidence strength. This study assesses correlation between these three classifiers on a per-patient basis by performing a cross-comparison of these signatures in a large cohort of patients diagnosed with PCa. MATERIALS AND

methodsPrimary PCa biopsy samples underwent whole-transcriptome gene expression microarray analysis. 22-gene GC scores were calculated using the commercially locked model. To reduce bias, GPS and CCP signatures were retrained for prediction of metastasis to harmonize end points. Pearson correlations and linear regressions (univariable/multivariable) adjusting for age, grade group, prostate-specific antigen (PSA), and T stage were calculated between signatures.

resultsAmong 50,881 patients (median age 68 years, median PSA 6.2 ng/mL), 60% were NCCN intermediate-risk. The GPS-derived and CCP-derived models had poor goodness-of-fit to 22-gene GC (

conclusionCorrelation between 22-gene GC and either GPS-derived or CCP-derived signatures is minimal to moderate. These tests are not interchangeable, and their use should be guided by the specific evidence supporting each signature.

Indexed as

Prostatic NeoplasmsTranscriptomeAgedAged, 80 and overGene Expression ProfilingHumansMaleMiddle Aged

Identifiers

PMID40479622
PMCPMC12148221

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.